Detail information of Os03g0112101_circ_igg.1


General Information
CircRNA Name Os03g0112101_circ_igg.1
ID in PlantcircBase osa_circ_017549
Alias NA
Organism Oryza sativa
Position chr3: 700788-704682  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.3 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAATACAGCAGAGAGCAGTCGAATATTTTGAACTAAGCAGGAAAGGTGCTGCTTTGGCAGAC
GTGTTAGCAGAAATGCCGAAATTTCCTGAACGTGAGgtctgatcggatggcacagcttctagat
gagcgggatctgggcgtactgacatctgtcatgagcctttttgtttcactggtatctaataatg
ctgaagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCTGATCGGATGGCACAGCTTCTAGATGAGCGGGATCTGGGCGTACTGACATCTGTCATGAGC
CTTTTTGTTTCACTGGTATCTAATAATGCTGAAGCATATTGGAATTGCCTTCCAAAATGTGTAA
GGATATTGGAGAGGATGGCAAGAAACCAAGATATCCCACAAGAATACACTTATTATGGAATTCC
ATCTCCATGGCTTCAGGTGCTTTTCTTTCCTTCGTATCATCTAGCTTTAATGTTTGATTCATCA
TTAAAGTTGGGGCTACATATATCTTTGTCGATATTATTGTGTGGCCTCGGTCTTGATGTGTTGT
TCACCATTACTTGTGTACTGCAACTAAGCCATTAAGGCAAGTAATAATTGAGGCTGGTTTCATA
GGTTTACTACTAGTAGATATAATCAAATATACATTCTGTGCTGTGCATAAGAAGCATGTAAATC
TATTGACTATTGGCAGAATTCCTATAATTGGAAGTTTAGTTTTTTCTGTTATTTAGGTGATGAA
ACAAAATCTTTCTTCCCAGTGCTAGTTTTAAGCAATGAATATGGTCTTGGCAGTAGACATCATG
AGAACTTGCTTCTGAACCTTGTATTGTTTTTATACATCAGCTATTATTTGCTGGTTTGTTCAAA
GAAATATATGCGTCTGTTGTGGCCATTGGATTTGTATTTTCTATATGTCTCCAACTGTTTTTCA
AGCTTAAATTTTCTATATACAGGTTAAGACAATGAGGGCTCTTCAGTACTTCCCTACAATTGAA
GATCCTGGCGCAAGACGAGCTTTATTTGAGGTACAACTATTTTGACTATTTCACATCTGGTCTT
CACATATACAACACAGTTCTTGAATGTAATGATACTTCTTTCATTCTTCAGGTTTTACAGCGCA
TTTTAATGGGTACTGATGTTGTTAAAAACGTCAACAAGAATAATGCCTCACATGCTGTTCTCTT
TGAAGCTCTTGCTCTTGTGAGTTCAAACGAAAACTTCTACTACTATATATTTTAATTTCTAGCA
ATTTGTTTCTCAACCAGTTCCTCACCTTCCCTACTTTTATATTCATACAATTATCTTCATGGTC
TCCAGTGTTTCACCACTGGAGTAAAATAAAGCTTATCACGCATTTAGAATGCTTCTCTAAGTTC
TCCCGATTATAGGTTATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTC
TTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGGTAAGTTGTACTTT
GCAACAGTAATACTGTTTGATTCTATATATGTTTTTTTGGTACTTTGGTAATGTTTCGTTCACA
TTCCTGATAGTCTATAAATGCTTCATTCGCATTAAATCCCCGTGAGTGAAAACTTTGCCATAAT
GTGATGGTATTTCATCTGTCTTCACAGGAAAACATGTCTAGGATGCTGTTAGTAACAGATGTAC
AGGATATCATTAAAAGGCACCAGGCCCAGATTATTACCTCTTTGAAAGATCCAGATATCAGGTA
CCTGAGGCCTTACATTTTCTGTGACTGCATAGACATTACACTAGCCACAAATGGACTTGGTATT
ATTTGAGCAAAAAAACACAATTTAGACTAATCTCCTTTTTTTGTACTCACAACCACTTCCTGAA
TCCTGAACACCTGATACATGGTTCATACAAGGTGCTCCACGCATGACTTAATAACTGCTATTGT
TCGTATCAAACTATTTGTTGCCAGAAGAGGAGCTTAGTGATAAAAGGGTCAAGTGTGATAGCTA
GTACTGCACTAATAGAGGATGAAAATTGGATTATATACTGTACCATATTTCAGTAATTCAGTTT
GTTTTTTGAAATGTTTTACATCCATTATTTTGGTTAAGCTGCATAATTATATGTATATCACACC
TTGCAGTATTAGAAGGCGGGCTCTTGATCTGTTATATGGTATGTGTGATGTTACGAATGCAAAG
GAAATTGTCGAGGAGTTATTGCAGGTATATAATATTGAAATAGTGGTCTCTCAAATGAAAAATA
AACTTCGAAAAATATTGAGGCATGTTATTTGTCGATGTCATCTGTTGGTCTTGTTATGTGAATC
CTAAGACTAGTTATTATCTTGTTTCTCAGTATCTTAACACAGCTGAATTTGCAATGCGCGAAGA
GCTGTCCCTGAAGGCAGCTATCCTTGCTGAGAAATTCGCTCCAGATCTTTCATGGTAAAGTATT
TTTTGCGATACAGCCAATTTTTCCAGTTACTTTGTTGTGAAATGTGAGCTATTTTTTAGATGAT
TAGTGTGTGATGTATTTATAAATGAACAAATTTAACCTCTTAACATATTTGCATAGTGCTTACC
TTACCTATTTTGAAACTATAATAGATAAAAAAAATACTCATCTATTAGGCTATATATACCTTGT
CTACTTGTCAGTTCTCACCGAGTCACCGTGCCTTTGTGGTATTGGACTTGAAATCTTAGCATTT
ATAGATGTTTTGCTTCTCAGGTATAGTAAAATTGAGAAACCCCAAATCTCATCCGGTGCAGCTC
TAAAATGGATGTCATAGATGATTTGATATAGATCAGCTTGTCATCCGGTTTTATTGATTGGTGC
GCAGGATGAAAGCAGTAGCAAACATTGCACTTATATAGAATAATAATTAGTTAATAACTTGAGA
AGCAGTGATCATTTGATCAACCTGGTGTTGCTTTATAGAAGTTCTGAACTACCTGTAGGATAGT
AACTCTAGCTAGCATTGGACTAGTTTTATGTGAAATTGATGATTTCCACCAATATCTAACTTTT
TTTTTCTATAGGTATGTCGATGTTATTCTGCAGCTGATAGACAAAGCAGGAGATTTTGTAAGTG
ATGATATATGGTATCGAGTGGTACAATTTGTCACCAACAATGAAGATCTGCAGGTTCTTGCATA
TTTCTGATTGCCGATAGCTATCTCAATTTTGTTTGTTGAACTTGAAGTTTGACTTGTAATTTTA
TCAGCCATATGCTGCAGCAAAGGCTAGAGAATACCTCGACAAGCCTGCTTTGCATGAAACAATG
GTTAAGGTATTTTCACCACCTGAACTCATACAGTTGTATCATGATTCTGTGAGGTCTAATTTTT
CAGTATTTCTAAGTGACTTTGATTTTATGAATTCTGCTCTACACCTAACAAACACTTTCACCAG
GCAGTGCTGTGTGCTAGCCTTGCAATGAAAAATAAAGAATGTGCCTAGTTATGATAAACACTAT
TCAATGACTTTGATTAAACGGGGACCTTTTTCTGTATTTGTTTGTTTGTAATTGAATCCATTTT
CCTAGCAACTATTCTCTATTGTTTTTATCATGCTTTATTTGTTCATGTCACACTGTACTTTTAC
AGGTGAGTGCATACCTTCTTGGGGAGTATGGCCACCTATTGGCCCGAAGACCTGGTTGCAGTCC
TAAGGAGTTGTTTGCTATAATAAATGACAAGCTTCCAACAGTATCGTAAGTTTTAAAAGCCTCC
TTAATTTACTAATGCTATCTTCTTCTATCCTTGCGTGATATATGTACCATGAAATTTTCATCAG
GACGAGTACTGTCGCTATTCTTCTGTCGACTTATGCCAAGATACTGATGCACACACAACCCCCT
GATGTGGGACTGCAGCAACAAATCCTGACAATATTCAAGAAGTACTAATTTATCCTACATCTAT
TGATTGTGCAGAACCTTTTCTATGGTCAAATCATTTATTTACATGTGCGTACGTTATTTCAGGT
ACGAGAGTTATATTGATGTTGAAATACAGCAGAGAGCAGTCGAATATTTTGAACTAAGCAGGAA
AGGTGCTGCTTTGGCAGACGTGTTAGCAGAAATGCCGAAATTTCCTGAACGTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.119935481
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5542
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017