Plant Circular RNA Database

Detail information of Os03g0111100_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os03g0111100_circ_g.3
					
						ID in PlantcircBase
						osa_circ_017525
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 641297-644283  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0111100						
					
						Parent gene annotation
						
							Similar to Dihydrofolate synthetase /folylpolyglutamate syntheta
se. (Os03t0111100-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0111100-01:11

General Information
CircRNA Name	Os03g0111100_circ_g.3
ID in PlantcircBase	osa_circ_017525
Alias	NA
Organism	Oryza sativa
Position	chr3: 641297-644283 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0111100
Parent gene annotation	Similar to Dihydrofolate synthetase /folylpolyglutamate syntheta se. (Os03t0111100-01)
Parent gene strand	-
Alternative splicing	Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0111100-01:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCATCATATGAAACAACAGAGATAGAGATAGACATATACCTTGAGCTTATTCCAGCACCACCAG
AAGTATTTCAAAAACTTTTCTTCGGAAATATCCACCctgaaaagaagttgatcggttttgtcgg
gcatttgtcctcagccactccattgccagtggaagtgattcaaaaaccagactgttctcactgg
aatttgtg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1150
Transcript exons: 641297-641406,641529-641684,641892-641970,642087-642338,
642452-642616,642725-642802,642959-643005,643088-643148,
643519-643575,643958-644041,644223-644283
CTGAAAAGAAGTTGATCGGTTTTGTCGGGCATTTGTCCTCAGCCACTCCATTGCCAGTGGAAGT
GATTCAAAAACCAGACTGTTCTCACTGGAATTTGTGTTGTTCATACCTTTATCACCATGAAGTA
ATTTCTGCCACACTCTTTGAAGCGACAATTGCCATGACAAATCAATTTGCTCAGGCTCTGCAGG
AGCTGATGAATTGGTACCAAGCTTGTTGTATTGTGATTGGTTTGGCACAAAAAGAGCCATCTCA
AAGTGGACCCCATTTTGAGTTGATGTATCCAGAAGATGCGGAAGCAACCTCATAGGATCCCTCA
CGGACATGCAATTGAATAGAAGAATCTTTTGAGAGTTGCCACAAGACTGAGACTGCACCATGGA
AGATGGTACTGTCCTATCCTCTTTAGTGACATGGCTAAACCATCTAGCACAAATTTCCATACTT
TCAGGACTGTGAGCCCCATCCAAATAGAAAACCAAAGAACAGTCTTTATCTTCCTCTCCTGAGT
TTACTTGTGAATCTGTAATGATCTGCGCTCGGCCTTGCAAAGAGGCATTTGACAGCCCACTAAT
AAACTGATCTGGTAACGGGTCAGTTCGGTTCAGTGGTATTCTTTCCACATGTCCTTGCTTCTCA
AGCCATGTACTAGCCAATGCAACTGCAAGGCCAGCATTTACATATTGGTGTTCACCACGCAGTC
CAAGATGTTGATCCTTTAATTGATGGGGTTCCAAAGGATGTGCAACTTGGAGTGAAACACCCAA
TTCTGAAGCCCTTTGTTTCAGAGCAATCATTGCCTCTTCTGGCTGTGGAGCAGTGTAGGCCGGA
ACTCCCTTCTTGAAAATCCCTGCCTTCTCACCAGCAATTTCTCCAAGTGTGTTTCCAAGAATTT
CCATATGGTCGTATCCAAGGGAAGCTATTCCACAAACCACAGGTGCTTCAACCACATTAGTTGC
ATCAAACTTCCCTCCAAGGCCAACCTCGAGAACAGCAACATCAACCTGTTCAGCTGAGAATATC
TTGAATGCTAACAATGCAAGGAATCTGAAGTAGGTTGGCATGGGAATATCATCATCAGTCTTCT
CCTTGAGCTTATTCCAGCACCACCAGAAGTATTTCAAAAACTTTTCTTCGGAAATATCCACC
						
					

						Genomic sequence
						
							CTGAAAAGAAGTTGATCGGTTTTGTCGGGCATTTGTCCTCAGCCACTCCATTGCCAGTGGAAGT
GATTCAAAAACCAGACTGTTCTCACTGGAATTTGTGTTGTTCATACCTGCACCGTTTGCTTCTA
AATTCAGATATCATCTTCAAGCTAAAAGTAACTTGTTTCAACAAGAAAACTGCATATGACCAAT
AGAAACATGAATGTCTATTGGTAATCAAGTTAAGAAGAACCTTTATCACCATGAAGTAATTTCT
GCCACACTCTTTGAAGCGACAATTGCCATGACAAATCAATTTGCTCAGGCTCTGCAGGAGCTGA
TGAATTGGTACCAAGCTTGTTGTATTGTGATTGGTTTGGCACAAAAAGAGCCATCTCAAAGTGG
ACCCCTGGGAAAAATGAAACAACAATAAATGCAAACATTCAACCAAGAACAGGAACAAATTAAA
CTTGAAAGTGAAATCAACAGTGAACAAATAAGTTTGTGCAGAACTCTAGTTGTTAGTGGAAACA
ACCAGTACACATTATAAAGTGGGAGTATTAGATAGATGAGTGAATATGGACTTCATTTTTCCAT
TCAAGCAATTTTTACCTACCATTTTGAGTTGATGTATCCAGAAGATGCGGAAGCAACCTCATAG
GATCCCTCACGGACATGCAATTGAATAGAAGAATCTGTGATTGGTCCAAAGGTAAATTTTCATA
TAAGGGGAAAGGAGATTCAATGATATGATGCATGCAAAATCAAGTCCATTCAAGTAAGATGAAA
CTAGAGAAACTGTGAGGCATGCCTTTTGAGAGTTGCCACAAGACTGAGACTGCACCATGGAAGA
TGGTACTGTCCTATCCTCTTTAGTGACATGGCTAAACCATCTAGCACAAATTTCCATACTTTCA
GGACTGTGAGCCCCATCCAAATAGAAAACCAAAGAACAGTCTTTATCTTCCTCTCCTGAGTTTA
CTTGTGAATCTGTAATGATCTGCGCTCGGCCTTGCAAAGAGGCATTTGACAGCCCACTAATAAA
CTGATCTGGTAACGGGTCCTAAATTCCATAAAAGCAGAAAGAAATTATCATAACGGGTCCTAAA
TTCCATAAGAGCAGAAAGAAATTATCATACCAACTTTTGTAAGCAACAATTATTGATTGAGACT
TACAGTTCGGTTCAGTGGTATTCTTTCCACATGTCCTTGCTTCTCAAGCCATGTACTAGCCAAT
GCAACTGCAAGGCCAGCATTTACATATTGGTGTTCACCACGCAGTCCAAGATGTTGATCCTTTA
ATTGATGGGGTTCCAAAGGATGTGCAACTTGGAGTGAAACCTTCAGAAGGCACAGACTAGCTTA
TTTTAGAAGATGCTTTCAGCTGTATTAACTATCAAGTTTACAAATATTACAAAACATAAGGGAC
AAGTTTAAAATAAAACATACACCCAATTCTGAAGCCCTTTGTTTCAGAGCAATCATTGCCTCTT
CTGGCTGTGGAGCAGTGTAGGCCGGAACTCCCTTCTGTTGATATCAGACGCCACAAGCAAATCA
ACAAAATCAAGAAATGTTGGCTACGTATTCTCTTTTAATCGGCAACAGTCCAAGTGAAAAAAGT
GATAATATAACAGTTCATCCTAATTTGTAGCATGACTTTGTTAGGGTAGTAGTTAAAATGACCT
TGAAAATCCCTGCCTTCTCACCAGCAATTTCTCCAAGTGTGTTTCCTGCTCACAGGGCACATGG
CAAAAGCATGAAACTACTTTTCCTAGTAATAGAGGGGCATCAACTGTCAGTTTCATGACTAACC
AAGAATTTCCATATGGTCGTATCCAAGGGAAGCTATTCCACAAACCACAGGTGCTTCAACCTGC
ATATGTGCAAAGTTATACACCTGTTACGCATTTATTATTTTGAATTATTTATGCCTTGAGTCGT
CAGGATGCAGTACTTGATCTGAATGAATTCATTAATGTTCAGAAGAAACAAAAGCTAAACTGTA
ACTCTGATTAAAATAGAAGACATCAGCATATGGTTAGACCCGAATGACTATATCTAGTACACTA
CTAGTACAGTTTGCTTTGTGATCACACCTTTTGTATGGGATGAAAGGACGGCCGCAAAGAAAAG
AAAGAAGAAGCAAACAGCCTAGGGCAAACAAGATTTTCATATAGTTCAAGTTTGTCTTGGATTT
CGATTACAAAGAAACTAACACTTGCACCCAACAGAACAGAACATACCACATTAGTTGCATCAAA
CTTCCCTCCAAGGCCAACCTCGAGAACAGCAACATCAACCTGTTTGACCCACGAAAAGAGGGAG
TAAAACATCAAATAATGTTTACCCAGAAAATCATAAATGGTTCCACTACATTCCAAGTCTCAAA
AAAGGAAATATGTGATATAAGTCTTTGGTGCGACTACCTTAGTACATTAAAGCCCTATAAAGTT
ACAATGTCATTCAAGTAAAATGGAGGAACAAGTTATGTGTACAAACAGATGCAAGCAGTAAAAC
AAAAATTTAAAAAGCAGGAAGTGTCTGCTGTTATATCTTTTTTGCCAGGCAGGAAGCGAAGAAG
TGACCCGGCCGAATTTTATTAAGATTGGGAGAAGATGTTACATTTTACAACAAGCATGGTTGTT
GCGAGGCATCCTAGCAGCCAACCCAGAAACATCTCACCTGTTCAGCTGAGAATATCTTGAATGC
TAACAATGCAAGGAATCTGAAGTAGGTTGGCATGGGAATATCATCATCAGTCTTCTCCTGAAAG
TACACCCATGTACATCATCATCTAGAAGTTTTGATAACGAAAGCAGCAGAAAAACACAAAGAGG
AAATGCACAGGTTCCTGGTATCATTTATTTTGTCGTTGTTTTTCATCAGTGCTAGCGCCCAGCA
CAGAGTGCCATCATATGAAACAACAGAGATAGAGATAGACATATACCTTGAGCTTATTCCAGCA
CCACCAGAAGTATTTCAAAAACTTTTCTTCGGAAATATCCACC
						
					

			
		

Sequences
Splice junction sequence	CCATCATATGAAACAACAGAGATAGAGATAGACATATACCTTGAGCTTATTCCAGCACCACCAG AAGTATTTCAAAAACTTTTCTTCGGAAATATCCACCctgaaaagaagttgatcggttttgtcgg gcatttgtcctcagccactccattgccagtggaagtgattcaaaaaccagactgttctcactgg aatttgtg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1150 Transcript exons: 641297-641406,641529-641684,641892-641970,642087-642338, 642452-642616,642725-642802,642959-643005,643088-643148, 643519-643575,643958-644041,644223-644283 CTGAAAAGAAGTTGATCGGTTTTGTCGGGCATTTGTCCTCAGCCACTCCATTGCCAGTGGAAGT GATTCAAAAACCAGACTGTTCTCACTGGAATTTGTGTTGTTCATACCTTTATCACCATGAAGTA ATTTCTGCCACACTCTTTGAAGCGACAATTGCCATGACAAATCAATTTGCTCAGGCTCTGCAGG AGCTGATGAATTGGTACCAAGCTTGTTGTATTGTGATTGGTTTGGCACAAAAAGAGCCATCTCA AAGTGGACCCCATTTTGAGTTGATGTATCCAGAAGATGCGGAAGCAACCTCATAGGATCCCTCA CGGACATGCAATTGAATAGAAGAATCTTTTGAGAGTTGCCACAAGACTGAGACTGCACCATGGA AGATGGTACTGTCCTATCCTCTTTAGTGACATGGCTAAACCATCTAGCACAAATTTCCATACTT TCAGGACTGTGAGCCCCATCCAAATAGAAAACCAAAGAACAGTCTTTATCTTCCTCTCCTGAGT TTACTTGTGAATCTGTAATGATCTGCGCTCGGCCTTGCAAAGAGGCATTTGACAGCCCACTAAT AAACTGATCTGGTAACGGGTCAGTTCGGTTCAGTGGTATTCTTTCCACATGTCCTTGCTTCTCA AGCCATGTACTAGCCAATGCAACTGCAAGGCCAGCATTTACATATTGGTGTTCACCACGCAGTC CAAGATGTTGATCCTTTAATTGATGGGGTTCCAAAGGATGTGCAACTTGGAGTGAAACACCCAA TTCTGAAGCCCTTTGTTTCAGAGCAATCATTGCCTCTTCTGGCTGTGGAGCAGTGTAGGCCGGA ACTCCCTTCTTGAAAATCCCTGCCTTCTCACCAGCAATTTCTCCAAGTGTGTTTCCAAGAATTT CCATATGGTCGTATCCAAGGGAAGCTATTCCACAAACCACAGGTGCTTCAACCACATTAGTTGC ATCAAACTTCCCTCCAAGGCCAACCTCGAGAACAGCAACATCAACCTGTTCAGCTGAGAATATC TTGAATGCTAACAATGCAAGGAATCTGAAGTAGGTTGGCATGGGAATATCATCATCAGTCTTCT CCTTGAGCTTATTCCAGCACCACCAGAAGTATTTCAAAAACTTTTCTTCGGAAATATCCACC
Genomic sequence	CTGAAAAGAAGTTGATCGGTTTTGTCGGGCATTTGTCCTCAGCCACTCCATTGCCAGTGGAAGT GATTCAAAAACCAGACTGTTCTCACTGGAATTTGTGTTGTTCATACCTGCACCGTTTGCTTCTA AATTCAGATATCATCTTCAAGCTAAAAGTAACTTGTTTCAACAAGAAAACTGCATATGACCAAT AGAAACATGAATGTCTATTGGTAATCAAGTTAAGAAGAACCTTTATCACCATGAAGTAATTTCT GCCACACTCTTTGAAGCGACAATTGCCATGACAAATCAATTTGCTCAGGCTCTGCAGGAGCTGA TGAATTGGTACCAAGCTTGTTGTATTGTGATTGGTTTGGCACAAAAAGAGCCATCTCAAAGTGG ACCCCTGGGAAAAATGAAACAACAATAAATGCAAACATTCAACCAAGAACAGGAACAAATTAAA CTTGAAAGTGAAATCAACAGTGAACAAATAAGTTTGTGCAGAACTCTAGTTGTTAGTGGAAACA ACCAGTACACATTATAAAGTGGGAGTATTAGATAGATGAGTGAATATGGACTTCATTTTTCCAT TCAAGCAATTTTTACCTACCATTTTGAGTTGATGTATCCAGAAGATGCGGAAGCAACCTCATAG GATCCCTCACGGACATGCAATTGAATAGAAGAATCTGTGATTGGTCCAAAGGTAAATTTTCATA TAAGGGGAAAGGAGATTCAATGATATGATGCATGCAAAATCAAGTCCATTCAAGTAAGATGAAA CTAGAGAAACTGTGAGGCATGCCTTTTGAGAGTTGCCACAAGACTGAGACTGCACCATGGAAGA TGGTACTGTCCTATCCTCTTTAGTGACATGGCTAAACCATCTAGCACAAATTTCCATACTTTCA GGACTGTGAGCCCCATCCAAATAGAAAACCAAAGAACAGTCTTTATCTTCCTCTCCTGAGTTTA CTTGTGAATCTGTAATGATCTGCGCTCGGCCTTGCAAAGAGGCATTTGACAGCCCACTAATAAA CTGATCTGGTAACGGGTCCTAAATTCCATAAAAGCAGAAAGAAATTATCATAACGGGTCCTAAA TTCCATAAGAGCAGAAAGAAATTATCATACCAACTTTTGTAAGCAACAATTATTGATTGAGACT TACAGTTCGGTTCAGTGGTATTCTTTCCACATGTCCTTGCTTCTCAAGCCATGTACTAGCCAAT GCAACTGCAAGGCCAGCATTTACATATTGGTGTTCACCACGCAGTCCAAGATGTTGATCCTTTA ATTGATGGGGTTCCAAAGGATGTGCAACTTGGAGTGAAACCTTCAGAAGGCACAGACTAGCTTA TTTTAGAAGATGCTTTCAGCTGTATTAACTATCAAGTTTACAAATATTACAAAACATAAGGGAC AAGTTTAAAATAAAACATACACCCAATTCTGAAGCCCTTTGTTTCAGAGCAATCATTGCCTCTT CTGGCTGTGGAGCAGTGTAGGCCGGAACTCCCTTCTGTTGATATCAGACGCCACAAGCAAATCA ACAAAATCAAGAAATGTTGGCTACGTATTCTCTTTTAATCGGCAACAGTCCAAGTGAAAAAAGT GATAATATAACAGTTCATCCTAATTTGTAGCATGACTTTGTTAGGGTAGTAGTTAAAATGACCT TGAAAATCCCTGCCTTCTCACCAGCAATTTCTCCAAGTGTGTTTCCTGCTCACAGGGCACATGG CAAAAGCATGAAACTACTTTTCCTAGTAATAGAGGGGCATCAACTGTCAGTTTCATGACTAACC AAGAATTTCCATATGGTCGTATCCAAGGGAAGCTATTCCACAAACCACAGGTGCTTCAACCTGC ATATGTGCAAAGTTATACACCTGTTACGCATTTATTATTTTGAATTATTTATGCCTTGAGTCGT CAGGATGCAGTACTTGATCTGAATGAATTCATTAATGTTCAGAAGAAACAAAAGCTAAACTGTA ACTCTGATTAAAATAGAAGACATCAGCATATGGTTAGACCCGAATGACTATATCTAGTACACTA CTAGTACAGTTTGCTTTGTGATCACACCTTTTGTATGGGATGAAAGGACGGCCGCAAAGAAAAG AAAGAAGAAGCAAACAGCCTAGGGCAAACAAGATTTTCATATAGTTCAAGTTTGTCTTGGATTT CGATTACAAAGAAACTAACACTTGCACCCAACAGAACAGAACATACCACATTAGTTGCATCAAA CTTCCCTCCAAGGCCAACCTCGAGAACAGCAACATCAACCTGTTTGACCCACGAAAAGAGGGAG TAAAACATCAAATAATGTTTACCCAGAAAATCATAAATGGTTCCACTACATTCCAAGTCTCAAA AAAGGAAATATGTGATATAAGTCTTTGGTGCGACTACCTTAGTACATTAAAGCCCTATAAAGTT ACAATGTCATTCAAGTAAAATGGAGGAACAAGTTATGTGTACAAACAGATGCAAGCAGTAAAAC AAAAATTTAAAAAGCAGGAAGTGTCTGCTGTTATATCTTTTTTGCCAGGCAGGAAGCGAAGAAG TGACCCGGCCGAATTTTATTAAGATTGGGAGAAGATGTTACATTTTACAACAAGCATGGTTGTT GCGAGGCATCCTAGCAGCCAACCCAGAAACATCTCACCTGTTCAGCTGAGAATATCTTGAATGC TAACAATGCAAGGAATCTGAAGTAGGTTGGCATGGGAATATCATCATCAGTCTTCTCCTGAAAG TACACCCATGTACATCATCATCTAGAAGTTTTGATAACGAAAGCAGCAGAAAAACACAAAGAGG AAATGCACAGGTTCCTGGTATCATTTATTTTGTCGTTGTTTTTCATCAGTGCTAGCGCCCAGCA CAGAGTGCCATCATATGAAACAACAGAGATAGAGATAGACATATACCTTGAGCTTATTCCAGCA CCACCAGAAGTATTTCAAAAACTTTTCTTCGGAAATATCCACC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.327439697

Conservation Information
Conserved circRNAs	NA
PMCS	0.327439697

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							644017-641308(+)
644019-644232(-)
641330-644232(-)
						
						Potential amino acid sequence
						
							MGISSSVFSLSLFQHHQKYFKNFSSEISTLKRS*(+)
MPTYFRFLALLAFKIFSAEQVDVAVLEVGLGGKFDATNVVEAPVVCGIASLGYDHMEILGNTLG
EIAGEKAGIFKKGVPAYTAPQPEEAMIALKQRASELGVSLQVAHPLEPHQLKDQHLGLRGEHQY
VNAGLAVALASTWLEKQGHVERIPLNRTDPLPDQFISGLSNASLQGRAQIITDSQVNSGEEDKD
CSLVFYLDGAHSPESMEICARWFSHVTKEDRTVPSSMVQSQSCGNSQKILLFNCMSVRDPMRLL
PHLLDTSTQNGVHFEMALFVPNQSQYNKLGTNSSAPAEPEQIDLSWQLSLQRVWQKLLHGDKGM
NNTNSSENSLVFESLPLAMEWLRTNARQNRSTSFQGGYFRRKVFEILLVVLE*(-)
MPDKTDQLLFRVDISEEKFLKYFWWCWNKLKEKTDDDIPMPTYFRFLALLAFKIFSAEQVDVAV
LEVGLGGKFDATNVVEAPVVCGIASLGYDHMEILGNTLGEIAGEKAGIFKKGVPAYTAPQPEEA
MIALKQRASELGVSLQVAHPLEPHQLKDQHLGLRGEHQYVNAGLAVALASTWLEKQGHVERIPL
NRTDPLPDQFISGLSNASLQGRAQIITDSQVNSGEEDKDCSLVFYLDGAHSPESMEICARWFSH
VTKEDRTVPSSMVQSQSCGNSQKILLFNCMSVRDPMRLLPHLLDTSTQNGVHFEMALFVPNQSQ
YNKLGTNSSAPAEPEQIDLSWQLSLQRVWQKLLHGDKGMNNTNSSENSLVFESLPLAMEWLRTN
ARQNRSTSFQGGYFRRKVFEILLVVLE*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	644017-641308(+) 644019-644232(-) 641330-644232(-)
Potential amino acid sequence	MGISSSVFSLSLFQHHQKYFKNFSSEISTLKRS(+) MPTYFRFLALLAFKIFSAEQVDVAVLEVGLGGKFDATNVVEAPVVCGIASLGYDHMEILGNTLG EIAGEKAGIFKKGVPAYTAPQPEEAMIALKQRASELGVSLQVAHPLEPHQLKDQHLGLRGEHQY VNAGLAVALASTWLEKQGHVERIPLNRTDPLPDQFISGLSNASLQGRAQIITDSQVNSGEEDKD CSLVFYLDGAHSPESMEICARWFSHVTKEDRTVPSSMVQSQSCGNSQKILLFNCMSVRDPMRLL PHLLDTSTQNGVHFEMALFVPNQSQYNKLGTNSSAPAEPEQIDLSWQLSLQRVWQKLLHGDKGM NNTNSSENSLVFESLPLAMEWLRTNARQNRSTSFQGGYFRRKVFEILLVVLE(-) MPDKTDQLLFRVDISEEKFLKYFWWCWNKLKEKTDDDIPMPTYFRFLALLAFKIFSAEQVDVAV LEVGLGGKFDATNVVEAPVVCGIASLGYDHMEILGNTLGEIAGEKAGIFKKGVPAYTAPQPEEA MIALKQRASELGVSLQVAHPLEPHQLKDQHLGLRGEHQYVNAGLAVALASTWLEKQGHVERIPL NRTDPLPDQFISGLSNASLQGRAQIITDSQVNSGEEDKDCSLVFYLDGAHSPESMEICARWFSH VTKEDRTVPSSMVQSQSCGNSQKILLFNCMSVRDPMRLLPHLLDTSTQNGVHFEMALFVPNQSQ YNKLGTNSSAPAEPEQIDLSWQLSLQRVWQKLLHGDKGMNNTNSSENSLVFESLPLAMEWLRTN ARQNRSTSFQGGYFRRKVFEILLVVLE*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0111100_circ_g.3

Address

Any questions?

Supported by