Detail information of Os03g0116900_circ_igg.1


General Information
CircRNA Name Os03g0116900_circ_igg.1
ID in PlantcircBase osa_circ_017609
Alias Os03circ00877
Organism Oryza sativa
Position chr3: 949765-953229  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.3 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads 2
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGAGCATTTGATGGTTTCTATCTTGGTCACAGCATTGTTCGGGCTCTTGTGCGTCTTGGCCA
TCGCCGTCGTGGAGGGGAGGAAGAAGAGCAGAAGAGatgctaaagaggccgagatagtaaaagg
agaaagggtccaagaatcggcaaagcccaaagagaggcgaaagggagcccagcgacccccgctt
cgcccaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGCTAAAGAGGCCGAGATAGTAAAAGGAGAAAGGGTCCAAGAATCGGCAAAGCCCAAAGAGAG
GCGAAAGGGAGCCCAGCGACCCCCGCTTCGCCCAAAGCAGCCGGAACAATCTTTCCCCGAGAAT
TTCTTGGCAGAGGCGGCGGCGGCGAACTCGCCGGGGAGAAGCGCAAGCGGGAGGAGAAGGAGGC
CACTGGAGATGCACCCACTTCATCGGATACCGCCAAAAGCGGCGGCTTTTCCCAGCACTCGATG
TGGAAGACGAGCCTATGCTCCTCCTGCTTCCATCTGATTTCCCACCACTGGATAGGCAAGTTTT
GCATTCCCCACTTTTCATCTGATTCTGCTCTTCAGTTTTTCCGATTGTTTCCTAACTGTTATCA
AATCTTTTCTCTCGCAAGTCCCTCCAACTGATAACTGATGGTATCTAACTTATCTTCTGCAAGG
AAGGTATCTAATTCTCGGTATTTGAGATGAAAATTCCTACAACCGTTCTAAACAATCCTACTAC
AAGAACTTCTCGAGACCATAAATCAAGTTCTGCGAATGAAACAATTTTTCTTTAGTGAAAAGCC
ATTATATCATCTACTGCACTACACAACATAATTACCTTCAAGCGTACCACCTTCCGTATTGCCA
GAATTAGTCCTGGCATCAGGCATTGAACATTTGTCACATCATGTCTTAAGGTGTAAATCTGAAA
ATGTTGGTGACTGGTCAGTTGAACAGTTAAAATCGGTGCCCAGTCCAGCCATGTTTCAAGCAAA
CATATTATTGATACCTCTCCAGGGCCTGAGAAGTTGATTGATGTGCTGGAAGCAAGGCCTGGTA
GAACCATACTGTGGACACGCACCCCATCTTCTCCAAGTATCTGACCCCTTGCCTTTTCCAAAAC
ATTTGTCCATTAGTTTTGTGAAACAGTATTGTGCAGCTGTAAGCTGTTATAGAGGTGAAAACTG
ATTCCAGTTTGTACTTTCACTGTTTTATAATGAACTGAACAGACTACAATATCCGTTTCTGTAT
CATTAGATAGATAGTGATGCAAAATATTTCCCTCACAACTTACTGGATTATCAGAGATCTTCCC
TGTTGTATATCTGACCAAGATCTGATATATTATTTGCAATCTGTATTGCATCTTGTGATGGCAA
ATCCTGCCAGGCTGCCAATTTCAACCATTGATGTCTATCAGTCTTTGTACACCTGAGTATTTGT
CTAGTATGTATTGACTACTGACAAGAGTGCTTCTAATGCTGATAGTTGTTGTTGAGTTTTTTCT
TTGGCATTTGATTGATTGTTAGAATATACAATGTTTATTGCACATGATGTTCTGTATCTGATGG
TTTTGGAAGGCATACTTGTATGGTGAATTAAGAGTTACTACATGGAAAAGCCCATTACTGATGG
GTTAGGTCTTGATTCCACTATCTCGACGCTATTGTAGTGGAATGAGGCCTGGATAGCAGCTTGT
TGTAGGAGCACTGAGCCAATTGACAATGTTGGCGCTACCAAGCAACCTTGATCATGAAATCAGC
ACAAGTCATGCTAAAATGATGTTAAAATGGTAAATACATGATAATTGCAATAATGATGTATAGT
ATTACCATGCTTGCCTTCTCGCAGAATGCTGACAGCTCAGTTACTGTATCTAACTCAATGTTTG
GAACGTACACCACACTGTTTAAACCAAATGCCGCTGCCTGTTTATGAACCATGTTTGTGTCGAT
AAAAACAATTAGATTTCAGAAGATTGTACAGAATCTGAATGGCATTATACTTCTTTATCAATGT
TGTGCAGTGTGATTACTGAATTAGAGGGCACTCATGTGGTCCTGGTGACTAGTATTGGTTAGTT
CATTGAATGTGAACTGTGACCTTTTTCTGTTATTTGGTTACAAAGCAAATAATTCTTTTACTCG
TATAAACTCATGAATTGATAATAATGTAACCTTTTAGAGTAATAAGGTTATACTTGGTACAAGA
TTTAGTTATACTGCCCTGATGCTTCCCATTGAATGGATCAAACTGGTTTGTATTTTGTATAATC
CTGTACCTCACAATCCCACTTTACAATGTAACTTAGTTTTTTTCCCCATATTGTAGGTGGATAG
CTTACCTGTTTGACATTGTCATAAACAGTTGAAGGTTCACTGAAATCAACCACCACTCCAGTTG
CTCTCGACTGAAAGAACATAAGTTTCCATTAGCAAACTGTGCACCGTACAAGTGAGCATAAGCA
TTTTATCGGACAATGAAGAGGCCAGTACCTGTGCAATTGAGCCGAGAACCATTGTGAGATCATT
GAGCACCGGAATTTCCAAGGCTTCTTCCATGCCATTTATCTAGAAGAACAATGCCGGCATTTAT
AAACTCTAGGAGACAAAGATCAAGCAGCTATTGCAGCGGGGAGACGGTCTAATTTCAAGGGAAA
TGGTGCATTCAGTGAATGGTGAGTACCTCTCCTGCATCTAGGCCTACACACTGAGAATCTATGG
CCCCTGCAAGCTCCATTCCCCTTGCTTTGCTTACTGCCACTATTGCCGTTCTTCCGATTTCTCT
TGTGGCCCCAATGATAACAACCTTTTCAATATACCACCAGATTTTGCCCTCAGAGCAAGTTACA
GTGCTACTAGAGAAGAAGATCCACAAGGTCATAACCCACAGTACCTTGATTGTGATCTGAGATG
GCGGCATCTGCGTTGAGCAGAAGACCTTTGCTGCTGCATTTCTCCTGCCAATCTTTCCGGATGC
TCTGGTATGAACAGAGTGGCATAAAGTAACCATGCTTTTGTTCTGAAGACGGAGATTACAGGAA
AGCGAAGGTTCAGGTAAGCCATGTCCTCTCTATTTGTCTTGTTTTTCCCTAACCTTGAGCTACC
TTATCCTGCTGTGAACCCAGCGTGTGTGTGGCTTAAAATCGCTTCGGTTGCACGCATACCATCA
GCCTCTCTGGACCATCTGATTCCATGGTATTGTCAAACACCAATTTAACGCTATACTATTTTCA
CAGGAATTGCATTAGTCTGCATTAATCAGGCGTCCTGGAGCGAGCATATTGTGATTCATCAGTT
CACATGGAGAGATGGTGAATTGGTGACCATCGCCGTGGTGTACTGATGGTGTGGATGATGCTGA
TCCATGGTCCGAAACCCAAATTAGCTCTCACTGAAAACGGCTGGCCGAGCCCAACAGCAACAAG
GTGCCAAAACCCAAACATTGGCACAGGCATACGAGGCACTTGTCGGGGCAGCAGAGTGCAGACG
CCAGAAGCGGCAGGTAGCCAGGTACAAGTAGCCATTGCTCCCCATCTTCTTCTAGTCGTCTTCT
CTCCCACTCGCACGCACGCACACTCGAGTGATGAGCTCATGAGCATTTGATGGTTTCTATCTTG
GTCACAGCATTGTTCGGGCTCTTGTGCGTCTTGGCCATCGCCGTCGTGGAGGGGAGGAAGAAGA
GCAGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.205403903
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015