Detail information of Os03g0110500_circ_g.1


General Information
CircRNA Name Os03g0110500_circ_g.1
ID in PlantcircBase osa_circ_017521
Alias NA
Organism Oryza sativa
Position chr3: 609923-613272  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method circRNA_finder, find_circ
Parent gene Os03g0110500
Parent gene annotation KIP1-like domain containing protein. (Os03t0110500-01)
Parent gene strand +
Alternative splicing Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.3 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads 2
Tissues pistil
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0110500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGACATCGAGCAGCGGGTGCGGGCGCTGGCGGTGAGCGTGCCGGAGGACGCGGCGGCGACGGC
GACGGACCACTCCTTCGCCGAGCGCGCTGAGAACTAtcacacgagagagagagagagagagaca
aagctcagagctgcttcctcccaaaagcttcttccaacaacaatggcgtcgttctctcctcctc
cccgctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCACACGAGAGAGAGAGAGAGAGAGACAAAGCTCAGAGCTGCTTCCTCCCAAAAGCTTCTTCCA
ACAACAATGGCGTCGTTCTCTCCTCCTCCCCGCTAAACCGCCGCCGGCGTCCCGACCCGACGTG
CTTGTAAGTTCATCTCTATCTCTCTTTCTCGTCCTCTCTTCTTAGTGTGATCTCTCTCTCTCTC
TCTCTCTCTCTAGAACCCTAAACCCTCTAGAATCGAATCGAATCCGTTTTTAAGTGGCTCGTTG
GGTTCTTCTACAGTACGAGAATCGTATTGCTTACCAAGTGGAGTGGTTACTAGTCGCAACTCTC
AATTAAGAGCAGCAACATTTGGTCTCTTTGGATTTCTCTCCTCGCTTCGCATAACCCTCCATTA
TCATGTTGAAAACCATCCAATCTATACCTCTGAATAACTGATTCACACCACTGATTTCTTTGAG
ATTTTCGTCGGTGTTTTTTTACCCCATCCATCCATTTATCTTAGATTGATACAGCAGTTCTACC
CATGACGTGATAGTAGTAGTAGTTTTCCGTCATCAGAAAAAAAAGGGTGACGATTTGAAACCAC
TCCAGGTCTCTCCTGATGATAAAAAAGTAGAGAGGAGATGCACTAGAAGACAGTGAGTAATTCC
ATTGCTGGGCACACTAGTACTGCACCCATGTTGTCCTCTCATGTGCAATGAAAATGACACTTGC
TATCCCTTGTCCAACCGTGTCACTGTAGCACTAAAACCCTTTTCCTTTCCTGGCGCAAAAATCA
TCAAAAAATTTTTTGTCCAACTGCAAAAGGCAAAACTAATTGAATGAACCACTAGTACTAATTG
ACAGTAGGTTTAGTTTTGACAGTGTGGCACCCGGGTTAACCATTCGAAATGCTAGGGCATCCAC
AATGTGCTCAAAAACTTAGTAGTAAGCAATAAATACAGCCTTAATACCAGGTATTGTGGAGGTA
GTAAGCAACAAATAGCACTATGACCTGCTAGTAAGGAATAAAAAATCATTGATTCTCTCAGCTA
TGTATTGAATCTTTCTTCTCTATCCATACTACCGTATACTTTTAGATTTTTATATACATGTGGG
ACCCATCTTATTACCTCCAATACATTGTGAGATCTTGAATAACAATTACCTACTTTTGGTTGGT
CCCACCTTATTTACTACTTGGGAAGGATACATTGCTGATGCCTTACAAAAAAAAAACTTTTTTT
TTGCACACTGACTCCAACATGCCTCGGTCACTGTAAAATCGATGAACCCTACAGTAGGGAGGAG
TAGCACTGCACACACAGTACGGTCGGCACGGGCTAATGGCCTATCCCGTGCGTTGAGATTCGGG
ACGGGGGTTAGCGCAACAAGTCAAATTCTCCTGTCCTGTCATGTCCCGCCTCCAACAGCGACAA
CACCTCTCCTCGCCGCGCCTTTCCTCACGTCTGCTCCTGCACAGATACTGTTCATCAGTATTGG
ATTCTACAGCCTTCACCACCACGCCACGCGATGTGCCTGCACACACGCACACAGTATTCTTCAC
AATTTTTTACAGTACTGTATAGGATTAGAGTAGTATCATGTCACAGTGAAGAGACGAGGCTGTG
CAGTGTAACGTTGTCTGTTAAGTACTACTGCTAACCCTTGGGCCTTGTGTCAGGTTGACTGCAT
CTGCGACAAGGCGAGAAGAGAACGGGGGCCCAAGCCCACGCCTCGCCGAATCGCGTCGGTGCTT
TGGATCGTGGCCATGGACATGGAGACGGAGAAGCAGCAGCAGCAGACGAGGTGCCCGCCTTGGC
TCCAGGCGGCCATTGCAGGTTCGCCCGTTACTCCCTCCCTCCATTCTCATCCCTGTTTCTTTAA
TTGCTCATTCTCACGTGCTTAATTTACTCATCTCTGTGCACTGTATCTTCGGTGCTCGTATGAA
TGCAAGTAGTTGTTGCTAGTAGTACTAGTACTAGCAGAGTAATTAAATTAAAACATGGGGAATT
AAATCCTCTGCTGCAGTATGTGTACTCACTAGGCAGGCAGGCAGTGGATATGAGCACTGACACA
GTAAGTATAGAGATCTTGTGGTTAAACAGTCAAATTCTCTCCTCCTCACTCATCCATCCTGTGA
TGAAATCTCTGAGCTGATACAGCGCACATTGATATGTCACGGGTGTCCTGTGATACGCATTCAT
GGCCCCCCATGATTCTCCGTTTTTTACCCCCATCCATCACTGCACATTGCAGTACTACTCCTAC
TTGATCTGCTGCATGTCATGTGTCTGGTCCGCGTGCTATCAGTCATCTTCCTCTAGCTTACACA
CAGGCTTTGCATCCTTCATGCTCCAGCCGTGTCACTGGCTCACTGCTCTGCCATGGATCATCCA
GGACATGAGCATCTCGTAAGCTACAGTTATTCTCCATAGCCACTACTGTACTCACTCTCCTCCC
GTGGGAGTACCTGCTTCTATCACAGATTCACAGTACTGTGTTGACAGGCAATGTGGGTGATTGC
TGACGTGTGTTTGTTGCTTCTCGTTTGTTTCTTCACTCGCCTTGGCGAATCTCTTCTGGATGAT
GATGACAAGCCGGTGGTTTGACACTGGCCTCTCGTCTCTTCCTGTGTGCTTCGAAATTTGAAAT
TTGAACCCGATTCTCTATGCGTGACAAACTGTTTGGCACCAATCATTCCAAAGTCAGCCCCATT
CACCACCGGAGTACACCAAAAGACAAGAACAGACACAGCTCGTAGCTAGGCTTGGCATCTCCAT
GACAACATCATCATTCAGCTCACCTTCCCTTTTACCCGCCACTTCCTTTTTACTCCACCACACT
ACAGTACATGCTAGTACTACATGTCTTGTTCTTTTCTAGTGTAGCGCTAATTTTATCTGAAATT
TTGTTAGGATTTGAATTTGAACAAATTTGATTAGGAGTAGTAACAAAGAAGATTAACTAGTTAT
AAAGAACAAAGCAAAGGTCCCCATCGTTTGGCTTATTTCCTAATAAGCCAAAACGGTTTGTTAG
GAAATAAAAATGGATTCCCCGCAAAAAAAAAGAAATAAAAATAGATTTGTAGGTAAAACTTTTT
CAAATGTGTTCTTGGTGATTTAAAAGCCAATATTGAAAAAGAAATTACGTTAAAAATATCTCAA
AATTAAGCTTGAAATTTTAAAATTTGGCTTTTTCTTTGGCTGATTAGGCCATCGGAACCAAAAT
TTGTTTGAGCTGATGATGATCTGACGTGTGCAAAATGGTGATGGGTTTTGTAGACATCGAGCAG
CGGGTGCGGGCGCTGGCGGTGAGCGTGCCGGAGGACGCGGCGGCGACGGCGACGGACCACTCCT
TCGCCGAGCGCGCTGAGAACTA
Conservation Information
Conserved circRNAs NA
PMCS 0.098974697
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017