Detail information of Os10g0320400_circ_g.6


General Information
CircRNA Name Os10g0320400_circ_g.6
ID in PlantcircBase osa_circ_006457
Alias Os10circ02205/Os_ciR601
Organism Oryza sativa
Position chr10: 8693803-8696970  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os10g0320400
Parent gene annotation Similar to ATP synthase gamma chain, mitochondrial precursor (EC
3.6.3.14). (Os10t0320400-01)
Parent gene strand +
Alternative splicing Os10g0320400_circ_igg.1 Os10g0320400_circ_g.1 Os10g0320400_circ_g.2 Os10g0320400_circ_g.3 Os10g0320400_circ_g.4 Os10g0320400_circ_g.5 Os10g0320400_circ_g.7 Os10g0320400_circ_g.8
Support reads 5/50
Tissues leaf and panicle/root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os10t0320400-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATCTTTTTTTGTTTTGCTGTTCGAAAAAAGTTCACTTGTCATATGGAGCAGCCTTTCCCTCG
AGTGGATCCTCATGCTAAGTTGCAATAATTAGCCCAgtgtcgatgtcaagaagaatgttattgt
agccattacctctgacaagggtctttgtggtggtatcaactcaacgtcagttaaagtcagcaaa
gcactcca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 157
Transcript exons: 8693803-8693849,8696861-8696970
GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGAAACTTTTGCCCATCTT
TTTTTGTTTTGCTGTTCGAAAAAAGTTCACTTGTCATATGGAGCAGCCTTTCCCTCGAGTGGAT
CCTCATGCTAAGTTGCAATAATTAGCCCA

Transcript length: 163
Transcript exons: 8693803-8693859,8696865-8696970
GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGTTTTGCC
CATCTTTTTTTGTTTTGCTGTTCGAAAAAAGTTCACTTGTCATATGGAGCAGCCTTTCCCTCGA
GTGGATCCTCATGCTAAGTTGCAATAATTAGCCCA

Transcript length: 246
Transcript exons: 8693803-8693896,8696414-8696453,8696859-8696970
GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGTCAGCAAAGCGGTGAAATGCTTGATCGACTCACCCTCACATACA
ACAGGTTGAAACTTTTGCCCATCTTTTTTTGTTTTGCTGTTCGAAAAAAGTTCACTTGTCATAT
GGAGCAGCCTTTCCCTCGAGTGGATCCTCATGCTAAGTTGCAATAATTAGCCCA

Transcript length: 308
Transcript exons: 8693803-8693916,8696351-8696453,8696880-8696970
GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGTCAGCAAAGCACTCCACAAGTTGACTTCTGGAGAATGCATGCAG
TGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCTTGAT
CGACTCACCCTCACATACAACAGGTTTTGTTTTGCTGTTCGAAAAAAGTTCACTTGTCATATGG
AGCAGCCTTTCCCTCGAGTGGATCCTCATGCTAAGTTGCAATAATTAGCCCA

Genomic sequence GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGTCAGCAAAGCACTCCACAAGTTGACTTCTGGTAATACTTTGCAT
GGTTATTTTTGTTATCATTTAAACATTAGAAGATACTAAAACAAAGTTTTTGCACCTCAAATCA
GGACCAGAGAAAGAAAGCAAGTATGTCATATTAGGAGAAAAGGGTAAAGTTCAACTCATTCGTG
ACTCCAAGGATAACATCGAGATGACAGTATCTGAGTTGCAGAAGAACCCTATCAACTACACACA
GGTATGTTGTTTTCCTGAGCTTTTACTATGCTATGGGTGCACCTTTTATTATGAAATGCTATTC
ATTATTTGTGAATTTGTTTCTGAATTAAGTCTAAAGTTTGGCAATTGAAAACTGTTTTGTAGTT
TCTTATATTGTCAGTGAATTTTGCTCTCGAATTTTGAATTTTGCAAGAGAAGCATTCCTAATGT
AAAAGGAATTCTGTCATGTCACATTGGACTTCTGATTTGGAACACATTTCAATTTGTCAATGAC
TAATCTCTGTTATTATAGCCAAAATATATATACTGATTTATCAATCTAAAATTTTACCAAATCA
GACTCACTTCAGCCCACTCCGACTGTACCTTCCATTCCTTTTTCTCCATACTTTCTCCTGTTGC
TGGCAAGCTGGGGCTAAGACTTGTTACAGAAAATCACTCTTTGAGATACTCGAATGAGACATAG
ACATGATTGATCATCAAATGATGTGTTCCTCTTGTGTTTTAATAGTAACACTAGTTAGGGACTA
GGAATAAGGCAATGATGTTGGAGCTATTGCAAGCAATGAGGCAGGGGAAGGGAGCCTGGTGCCA
TCTTGGGAGGCTCCCTGTTTCAATATTTCCTTAAGCCAGCCACCACTACCTGGGTTCTCTAAGG
CTGTCACCTGTCCTGTCCTGCTGATGTGTCCACCTGTGCCACTGAATCACAGCTGCTATGTTGG
GGGCTGACACAGCTGCCATATTGGATCTGACTTGGTTTTGCTGGCCCTAGTTGGTGGGGAAAAA
GGTCTGATAAGGGGATGGAGCATCAACCTGTGCTGAAAAAGTGGGAGGAGGGTACGGTAGTCAA
GTTGCATGGCTAGTCATGGACCAATTGACAAGTCAGCCACAGAGCACGACTTGAGGGCTACAAT
TTGATTTGGGAAACTTGGAATACGAGATAAGAGGAGAGCTGTTCAGTTTTCTCCTCCATATATG
ATTAGAGGTAGCCACCGGAGTCTGAGTAAGATTAGAGGGAGCACCAATAGTTGCACACCTGCTT
TCCTCATCTGCTCCCTGTTTTTTCTGACCTCACTTCTAATGTACCAACTCAAAGGCTTGTCTTT
GACTAAGTCATGATTAGTCCTCAAGTTGGTTTAGGTCTTGAGGGATGACTAGACTGACTGTGCG
ACTAACAACCATGGCTGAAGAATAGCACATCGGCATGGAGAAATGTGAAATATAGTGATGGATC
TCATTGCTGTAGGATAAGGAATGGCACTGGTGGTGGCGCAAAGTTGTGCAGTTAGCAGAATTAG
TTTCAGCTGTGTTAATTACGTTGCAGCAGAAGTTCACGGATGTGGTATATTTCAATGAAACAAG
AGAGGATTATGGTACTAGATGATGTGTGAGAAGAAAGTGTTTTTTAGATTTAAGCTTCTAGTTA
TGCTGTAGGTTGAAATATCTCATTTTCCTTTGCAAAGAAAGATGATCTGGATCATATTCATCTT
TTGTTATGTGTGCACGCATTGCAATATATCATAGCAGCTGGTATGATTTGAACAAAATTTGCTA
ACAAACCCTGAACTGTAAAAAGTCTTATGTTGTCTGACTTCCTTGAAATGTCTTCAGGGAAGTT
TTTGTTCAGTCGATTATTATTTGGTGGCTAAAGCAGATTTCAAAAACCTAATGTGCCTATTGGA
TTGAATAGATCTCCACTGTTTTCTTTGATGATGTTTCAGATTGCTGTGCTGGCAGATGATATCT
TGAAAAATGTTGAGTATGATGCTCTAAGGGTTGTTTTTAACAAGTTCCACTCGGTCATATCATT
CAAGCCCACAATGACAACCATACTTTCCCCAGAGGTAAATATCGGTGCTGAGGACATGAATTTG
TGCTCCTATAAAGTAATATGAATGATGTGACGTTAATACTAGTGGTTTGAATTGTTTTATAGGT
TATGGAGAAAGAATCGGAATCTGGTAAGGTTGGTGACCTGGATTCATATGAAATTGAAGGAGGT
GAAACTAAATCAGAAATTCTTCAGAATCTTACCGAGTTCCAGTTTTCTTGTGTAAGTTTGTCTT
CATTAATCATATATACCTCTCAATAGATGAATTAGCTACAACTATTACAGCCACAAAATCAAGT
CGCATCCATAAGGGTAAACGTTCCCTTTGTAGAGAGCGCAATCATTCTTTTTTCAAGGTATCCT
AGTGGTATCTTATGTTTTTGCTTTGTGGCAGGTTATGTATAATGCTGCTCTAGAGAATGCATGC
AGTGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCTTG
ATCGACTCACCCTCACATACAACAGGTATGGTCGTCTTACCTTCTCCATCTGTTTATGTGTGTC
GACTGCATAACGGTCGGAAATGGTCGGAAACGGTATCATTATTTTATTATTTTCTCGAAACGAA
CGGAAACGGTCGGGAAATTTCCATATTTATGAATTTATCTATTTAGTGTCAACTTCAATGCCAC
GCCGACATAAATTAAAAAAACTAAATTTTGAATACGGTAACCATCGGTTAAAATATTATTATTA
TATTAGTTTTGCGGAAATGGTATCGGTACGGTCGGGAAATTTCCATACCGTTTTCACCCCTATT
CACATGAAAGAACTGATACATTCGATTTCATCCCCGCAGGACACGTCAAGCATCTATCACTACA
GAGCTCATTGAGATTATCTCTGGCGCTTCTGCCCTTGAGGGATAATGATGAAACTTTTGCCCAT
CTTTTTTTGTTTTGCTGTTCGAAAAAAGTTCACTTGTCATATGGAGCAGCCTTTCCCTCGAGTG
GATCCTCATGCTAAGTTGCAATAATTAGCCCA
Conservation Information
Conserved circRNAs osi_circ_002775* osi_circ_008857
PMCS 0.633474131
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR529a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to Pi-starvation
Other Information
References Lu et al., 2015;Ye et al., 2015