Detail information of Os10g0320400_circ_g.8


General Information
CircRNA Name Os10g0320400_circ_g.8
ID in PlantcircBase osa_circ_006458
Alias NA
Organism Oryza sativa
Position chr10: 8696041-8696451  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0320400
Parent gene annotation Similar to ATP synthase gamma chain, mitochondrial precursor (EC
3.6.3.14). (Os10t0320400-01)
Parent gene strand +
Alternative splicing Os10g0320400_circ_igg.1 Os10g0320400_circ_g.1 Os10g0320400_circ_g.2 Os10g0320400_circ_g.3 Os10g0320400_circ_g.4 Os10g0320400_circ_g.5 Os10g0320400_circ_g.6 Os10g0320400_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0320400-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATGCATGCAGTGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGG
TGAAATGCTTGATCGACTCACCCTCACATACAACAGgttatggagaaagaatcggaatctggta
aggttggtgacctggattcatatgaaattgaaggaggtgaaactaaatcagaaattcttcagaa
tcttaccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATGGAGAAAGAATCGGAATCTGGTAAGGTTGGTGACCTGGATTCATATGAAATTGAAGGAG
GTGAAACTAAATCAGAAATTCTTCAGAATCTTACCGAGTTCCAGTTTTCTTGTGTAAGTTTGTC
TTCATTAATCATATATACCTCTCAATAGATGAATTAGCTACAACTATTACAGCCACAAAATCAA
GTCGCATCCATAAGGGTAAACGTTCCCTTTGTAGAGAGCGCAATCATTCTTTTTTCAAGGTATC
CTAGTGGTATCTTATGTTTTTGCTTTGTGGCAGGTTATGTATAATGCTGCTCTAGAGAATGCAT
GCAGTGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCT
TGATCGACTCACCCTCACATACAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.364554643
Functional Information
Coding potential Y
Potential coding position 8696045-8696348(+)
8696356-8696066(+)
Potential amino acid sequence MEKESESGKVGDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSR
NAGEMLDRLTLTYNRLWRKNRNLVRLVTWIHMKLKEVKLNQKFFRILPSSSFLVLCIMLL*(+)
MHAVSLEHVCLPWTAPAETLVKCLIDSPSHTTGYGERIGIW*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017