Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0320400_circ_g.8 |
ID in PlantcircBase | osa_circ_006458 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 8696041-8696451 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0320400 |
Parent gene annotation |
Similar to ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14). (Os10t0320400-01) |
Parent gene strand | + |
Alternative splicing | Os10g0320400_circ_igg.1 Os10g0320400_circ_g.1 Os10g0320400_circ_g.2 Os10g0320400_circ_g.3 Os10g0320400_circ_g.4 Os10g0320400_circ_g.5 Os10g0320400_circ_g.6 Os10g0320400_circ_g.7 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0320400-01:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.364554643 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8696045-8696348(+) 8696356-8696066(+) |
Potential amino acid sequence |
MEKESESGKVGDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSR NAGEMLDRLTLTYNRLWRKNRNLVRLVTWIHMKLKEVKLNQKFFRILPSSSFLVLCIMLL*(+) MHAVSLEHVCLPWTAPAETLVKCLIDSPSHTTGYGERIGIW*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |