Detail information of BGIOSGA032684_circ_igg.1


General Information
CircRNA Name BGIOSGA032684_circ_igg.1
ID in PlantcircBase osi_circ_008857
Alias Chr10:10106850_10110018(MH63RS2), Chr10:10614056_10617227(ZS97RS2), Chr10:10106850_10110018(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 7063611-7066782  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA032684_circ_g.1 BGIOSGA032684_circ_g.2 BGIOSGA032684_circ_g.3 BGIOSGA032684_circ_g.2 BGIOSGA032684_circ_g.3 BGIOSGA032684_circ_g.4 BGIOSGA032684_circ_igg.5 BGIOSGA032684_circ_g.6 BGIOSGA032684_circ_g.7 BGIOSGA032684_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATCTTTTTTTGTTTTGCTGTTCGAAAAAAGTTCACTTGTCATATGGAGCAGCCTTTCCCTCG
AGTGGATCCTCATGCTAAGTTGCAATAATTAGCCCAggtgtcgatgtcaagaagaatgttattg
tagccattacctctgacaagggtctttgtggtggtatcaactcaacgtcagttaaagtcagcaa
agcactcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTA
TCAACTCAACGTCAGTTAAAGTCAGCAAAGCACTCCACAAGTTGACTTCTGGTAATACTTTGCA
TGGTTATTTTTGTTATCATTTAAACATTAGAAGATACTAAAACAAAGTTTTTGCACCTCAAATC
AGGACCAGAGAAAGAAAGCAAGTATGTCATATTAGGAGAAAAGGGTAAAGTTCAACTCATTCGT
GACTCCAAGGATAACATCGAGATGACAGTATCTGAGTTGCAGAAGAACCCTATCAACTACACAC
AGGTATGTTGTTTTCCTGAGCTTTTACTATGCTATGGGTGCACCTTTTATTATGAAATGCTATT
CATTATTTGTGAATTTGTTTCTGAATTAAGTCTAAAGTTTGGCAATTGAAAACTGTTTTGTAGT
TTCTTATATTGTCAGTGAATTTTGCTCTCGAATTTTGAATTTTGCAAGAGAAGCATTCCTAATG
TAAAAGGAATTCTGTCATGTCACATTGGACTTCTGATTTGGAACACATTTCAATTTGTCAATGA
CTAATCTCTGTTATTATAGCCAAAATATATATACTGATTTATCAATCTAAAATTTTACCAAATC
AGACTCACTTCAGCCCACTCCGACTGTACCTTCCATTCCTTTTTCTCCATACTTTCTCCTGTTG
CTGGCAAGCTGGGGCTAAGACTTGTTACAGAAAATCACTCTTTGAGATACTCGAATGAGACATA
GACATGATTGATCATCAAATGATGTGTTCCTCTTGTGTTTTAATAGTAACACTAGTTAGGGACT
AGGAATAAGGCAATGATGTTGGAGCTATTGCAAGCAATGAGGCAGGGGAAGGGAGCCTGGTGCC
ATCTTGGGAGGCTCCCTGTTTCAATATTTCCTTAAGCCAGCCACCACTACCTGGGTTCTCTAAG
GCTGTCACCTGTCCTGTCCTGCTGATGTGTCCACCTGTGCCACTGAATCACAGCTGCTATGTTG
GGGGCTGACACAGCTGCCATATTGGATCTGACTTGGTTTTGCTGGCCCTAGTTGGTGGGGAAAA
AGGTCTGATAAGGGGATGGAGCATCAACCTGTGCTGAAAAAGTGGGAGGAGGGTACGGTAGTCA
AGTTGCATGGCTAGTCATGGACCAATTGACAAGTCAGCCACAGAGCACGACTTGAGGGCTACAA
TTTGATTTGGGAAACTTGGAATACGAGATAAGAGGAGAGCTGTTCAGTTTTCTCCTCCATATAT
GATTAGAGGTAGCCACCGGAGTCTGAGTAAGATTAGAGGGAGCACCAATAGTTGCACACCTGCT
TTCCTCATCTGTTCCCTGTTTTTTCTGACCTCACTTCTAATGTACCAACTCAAAGGCTTGTCTT
TGACTAAGTCATGATTAGTCCTCAAGTTGGTTTAGGTCTTGAGGGATGACTAGACTGACTGTGC
GACTAACAACCATGGCTGAAGAATAGCACATCGGCATGGAGAAATGTGAAATATAGTGATGGAT
CTCATTGCTGTAGGATAAGGAATGGCACTGGTGGTGGCGCAAAGTTGTGCAGTTAGCACAATTA
GTTTCAGCTGTGTTAATTACGTTGCAGCAGAAGTTCATGGATGTGGTATATTTCAATGAAACAA
GAGAGGATTATGGTACTAGATGATGTGTGAGAAGAAAGTGTTTTTTAGATTTAAGCTTCTAGTT
ATGCTGTAGGTTGAAATATCTCATTTTCCTTTGCAAAGAAAGAGGATCTGGATCATATTCATCT
TTTGTTATGTGTGCACGCATTGCAATATATCATAGCAGCTGGTATGATTTGAACAAAATTTGCT
AACAAACCCTGAACTGTAAAAAGTCTTATGTTGTCTGACTTCCTTGAAATGTCTTCAGGGAAGT
TTTTGTTCAGTCGATTATTATTTGGTGGCTAAAGCAGATTTCAAAAACCTAATGTGCCTATTGG
ATTGAATAGATCTCCACTGTTTTCTTTGATGATGTTTCAGATTGCTGTGCTGGCAGATGATATC
TTGAAAAATGTTGAGTATGATGCTCTAAGGGTTGTTTTTAACAAGTTCCACTCGGTCATATCAT
TCAAGCCCACAATGACAACCATACTTTCCCCAGAGGTAAATATCGGTGCTGAGGACATGAATTT
GTGCTCCTATAAAGTAATATGAATGATGTGACGTTAATACTAGTGGTTTGAATTGTTTTATAGG
TTATGGAGAAAGAATCGGAATCTGGTAAGGTTGGTGACCTGGATTCATATGAAATTGAAGGAGG
TGAAACTAAATCAGAAATTCTTCAGAATCTTACCGAGTTCCAGTTTTCTTGTGTAAGTTTGTCT
TCATTAATCATATATACCTCTCAATAGATGAATTAGCTACAACTATTACAGCCACAAAATCAAG
TCGCATCCATAAGGGTAAACGTTCCCTTTGTAGAGAGCGCAATCATTCTTTTTTCAAGGTATCC
TAGTGGTATCTTATGTTTTTGCTTTGTGGCAGGTTATGTATAATGCTGCTCTAGAGAATGCATG
CAGTGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCTT
GATCGACTCACCCTCACATACAACAGGTATGGTCGTCTTACCTTCTCCATCTGTTTATGTGTGT
CGACTGCATAACGGTCGGAAATGGTCGGAAACGGTATCATTATTTTATTATTTTCTCGAAACGA
ACGGAAACGGTCGGGAAATTTCCATATTTATGAATTTATCTATTTAGTGTCAACTTCAATGCCA
CGCCGACATAAATTAAAAAAACTAAATTTTGAATACGGTAACCATCGGTTAAAATATTATTATT
ATATTAGTTTTGCGGAAATGGTATCGGTACGGTCGGGAAATTTCCATACCGTTTTCACCCCTAT
TCACATGAAAGGAGAACTGATACATTCGATTTCATCCCCGCAGGACACGTCAAGCATCTATCAC
TACAGAGCTCATTGAGATTATCTCTGGCGCTTCTGCCCTTGAGGGATAATGATGAAACTTTTGC
CCATCTTTTTTTGTTTTGCTGTTCGAAAAAAGTTCACTTGTCATATGGAGCAGCCTTTCCCTCG
AGTGGATCCTCATGCTAAGTTGCAATAATTAGCCCA
Conservation Information
Conserved circRNAs osa_circ_006457
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR529a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021