Detail information of Os10g0320400_circ_g.1


General Information
CircRNA Name Os10g0320400_circ_g.1
ID in PlantcircBase osa_circ_006454
Alias Os_ciR6993
Organism Oryza sativa
Position chr10: 8693059-8696451  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0320400
Parent gene annotation Similar to ATP synthase gamma chain, mitochondrial precursor (EC
3.6.3.14). (Os10t0320400-01)
Parent gene strand +
Alternative splicing Os10g0320400_circ_igg.1 Os10g0320400_circ_g.2 Os10g0320400_circ_g.3 Os10g0320400_circ_g.4 Os10g0320400_circ_g.5 Os10g0320400_circ_g.6 Os10g0320400_circ_g.7 Os10g0320400_circ_g.8
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0320400-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATGCATGCAGTGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGG
TGAAATGCTTGATCGACTCACCCTCACATACAACAGtgagaacccgcatgaagagtgttaggaa
catccagaagattacaaaagcaatgaagatggttgcagcatcaaagcttcgagctgttcaaata
agaacaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGAGAACCCGCATGAAGAGTGTTAGGAACATCCAGAAGATTACAAAAGCAATGAAGATGGTTGC
AGCATCAAAGCTTCGAGCTGTTCAAATAAGAACAGAAAATTCACGTGGTCTATGGCAGCCATTC
ACCGCTCTTCTTGGGGATGTCCCTAGTATGTTATGTTTCGTTGTAGTACATATTTACAGTACCT
TTCTGCCGTAGTTATTATAGCTAAAGTTGATGCCTATCTTATTGAATGTCATGATATGCTAGAA
GCCTATGGCTACATTAGCATGCCTGGCTGCCACAAATCAAATGTACAACCTTATTCATGATCTA
GGAAGTTCATTTGATGTTGGTTCTTAAAAGTCAATGGCATTCAAGGTAAGAGATATTTGATGGT
GGGTAATTATCCCTGGTAAAGAAATATGTAGATATATATACTATGGGTGAATCTTCTGAGCTAT
TGGTTCAGTGGTGTAAGCATGGACTCTACATCTATTTACTAGACACGCTTCTCACTAATTTATA
AATGCACCACAGGTCTCATGCCACTTCTAATGATGCTGTGATCCTCAATTCATGAGGAAACATT
GATAGGCTTGCCTGTTGAGTTTACTCCATGCTTGGATCTGTCTAAATTATTTAATTCTTACGGA
ACAGCAGTTTTAATTTAACTGAATTAGATTGACATCATGTCTTTTTGGCAATAAGATTATTGAG
TTTTTGGTTTAGTTATTAATGTCTTTGATGCAACCACCAGGTGTCGATGTCAAGAAGAATGTTA
TTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTATCAACTCAACGTCAGTTAAAGTCAG
CAAAGCACTCCACAAGTTGACTTCTGGTAATACTTTGCATGGTTATTTTTGTTATCATTTAAAC
ATTAGAAGATACTAAAACAAAGTTTTTGCACCTCAAATCAGGACCAGAGAAAGAAAGCAAGTAT
GTCATATTAGGAGAAAAGGGTAAAGTTCAACTCATTCGTGACTCCAAGGATAACATCGAGATGA
CAGTATCTGAGTTGCAGAAGAACCCTATCAACTACACACAGGTATGTTGTTTTCCTGAGCTTTT
ACTATGCTATGGGTGCACCTTTTATTATGAAATGCTATTCATTATTTGTGAATTTGTTTCTGAA
TTAAGTCTAAAGTTTGGCAATTGAAAACTGTTTTGTAGTTTCTTATATTGTCAGTGAATTTTGC
TCTCGAATTTTGAATTTTGCAAGAGAAGCATTCCTAATGTAAAAGGAATTCTGTCATGTCACAT
TGGACTTCTGATTTGGAACACATTTCAATTTGTCAATGACTAATCTCTGTTATTATAGCCAAAA
TATATATACTGATTTATCAATCTAAAATTTTACCAAATCAGACTCACTTCAGCCCACTCCGACT
GTACCTTCCATTCCTTTTTCTCCATACTTTCTCCTGTTGCTGGCAAGCTGGGGCTAAGACTTGT
TACAGAAAATCACTCTTTGAGATACTCGAATGAGACATAGACATGATTGATCATCAAATGATGT
GTTCCTCTTGTGTTTTAATAGTAACACTAGTTAGGGACTAGGAATAAGGCAATGATGTTGGAGC
TATTGCAAGCAATGAGGCAGGGGAAGGGAGCCTGGTGCCATCTTGGGAGGCTCCCTGTTTCAAT
ATTTCCTTAAGCCAGCCACCACTACCTGGGTTCTCTAAGGCTGTCACCTGTCCTGTCCTGCTGA
TGTGTCCACCTGTGCCACTGAATCACAGCTGCTATGTTGGGGGCTGACACAGCTGCCATATTGG
ATCTGACTTGGTTTTGCTGGCCCTAGTTGGTGGGGAAAAAGGTCTGATAAGGGGATGGAGCATC
AACCTGTGCTGAAAAAGTGGGAGGAGGGTACGGTAGTCAAGTTGCATGGCTAGTCATGGACCAA
TTGACAAGTCAGCCACAGAGCACGACTTGAGGGCTACAATTTGATTTGGGAAACTTGGAATACG
AGATAAGAGGAGAGCTGTTCAGTTTTCTCCTCCATATATGATTAGAGGTAGCCACCGGAGTCTG
AGTAAGATTAGAGGGAGCACCAATAGTTGCACACCTGCTTTCCTCATCTGCTCCCTGTTTTTTC
TGACCTCACTTCTAATGTACCAACTCAAAGGCTTGTCTTTGACTAAGTCATGATTAGTCCTCAA
GTTGGTTTAGGTCTTGAGGGATGACTAGACTGACTGTGCGACTAACAACCATGGCTGAAGAATA
GCACATCGGCATGGAGAAATGTGAAATATAGTGATGGATCTCATTGCTGTAGGATAAGGAATGG
CACTGGTGGTGGCGCAAAGTTGTGCAGTTAGCAGAATTAGTTTCAGCTGTGTTAATTACGTTGC
AGCAGAAGTTCACGGATGTGGTATATTTCAATGAAACAAGAGAGGATTATGGTACTAGATGATG
TGTGAGAAGAAAGTGTTTTTTAGATTTAAGCTTCTAGTTATGCTGTAGGTTGAAATATCTCATT
TTCCTTTGCAAAGAAAGATGATCTGGATCATATTCATCTTTTGTTATGTGTGCACGCATTGCAA
TATATCATAGCAGCTGGTATGATTTGAACAAAATTTGCTAACAAACCCTGAACTGTAAAAAGTC
TTATGTTGTCTGACTTCCTTGAAATGTCTTCAGGGAAGTTTTTGTTCAGTCGATTATTATTTGG
TGGCTAAAGCAGATTTCAAAAACCTAATGTGCCTATTGGATTGAATAGATCTCCACTGTTTTCT
TTGATGATGTTTCAGATTGCTGTGCTGGCAGATGATATCTTGAAAAATGTTGAGTATGATGCTC
TAAGGGTTGTTTTTAACAAGTTCCACTCGGTCATATCATTCAAGCCCACAATGACAACCATACT
TTCCCCAGAGGTAAATATCGGTGCTGAGGACATGAATTTGTGCTCCTATAAAGTAATATGAATG
ATGTGACGTTAATACTAGTGGTTTGAATTGTTTTATAGGTTATGGAGAAAGAATCGGAATCTGG
TAAGGTTGGTGACCTGGATTCATATGAAATTGAAGGAGGTGAAACTAAATCAGAAATTCTTCAG
AATCTTACCGAGTTCCAGTTTTCTTGTGTAAGTTTGTCTTCATTAATCATATATACCTCTCAAT
AGATGAATTAGCTACAACTATTACAGCCACAAAATCAAGTCGCATCCATAAGGGTAAACGTTCC
CTTTGTAGAGAGCGCAATCATTCTTTTTTCAAGGTATCCTAGTGGTATCTTATGTTTTTGCTTT
GTGGCAGGTTATGTATAATGCTGCTCTAGAGAATGCATGCAGTGAGCTTGGAGCACGTATGTCT
GCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCTTGATCGACTCACCCTCACATACAACA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.121523001
Functional Information
Coding potential Y
Potential coding position 8696356-8693080(+)
8693071-8693080(+)
8693091-8696350(-)
Potential amino acid sequence MHAVSLEHVCLPWTAPAETLVKCLIDSPSHTTVRTRMKSVRNIQKITKAMKMVAASKLRAVQIR
TENSRGLWQPFTALLGDVPSVDVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKESK
YVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYTQIAVLADDILKNVEYDALRVVFNKFHSVI
SFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENACS
ELGARMSAMDSSSRNAGEMLDRLTLTYNSENPHEEC*(+)
MKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDVPSVDVKKNVIVAITSDKG
LCGGINSTSVKVSKALHKLTSGPEKESKYVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYTQ
IAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGE
TKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNSENPHEEC
*(+)
MFLTLFMRVLTVVCEGESIKHFTSVSAGAVHGRHTCSKLTACIL*(-)
Sponge-miRNAs osa-miR529a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017