Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os10g0320400_circ_g.1 |
ID in PlantcircBase | osa_circ_006454 |
Alias | Os_ciR6993 |
Organism | Oryza sativa |
Position | chr10: 8693059-8696451 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os10g0320400 |
Parent gene annotation |
Similar to ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14). (Os10t0320400-01) |
Parent gene strand | + |
Alternative splicing | Os10g0320400_circ_igg.1 Os10g0320400_circ_g.2 Os10g0320400_circ_g.3 Os10g0320400_circ_g.4 Os10g0320400_circ_g.5 Os10g0320400_circ_g.6 Os10g0320400_circ_g.7 Os10g0320400_circ_g.8 |
Support reads | 2/1 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0320400-01:6 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.121523001 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
8696356-8693080(+) 8693071-8693080(+) 8693091-8696350(-) |
Potential amino acid sequence |
MHAVSLEHVCLPWTAPAETLVKCLIDSPSHTTVRTRMKSVRNIQKITKAMKMVAASKLRAVQIR TENSRGLWQPFTALLGDVPSVDVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKESK YVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYTQIAVLADDILKNVEYDALRVVFNKFHSVI SFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENACS ELGARMSAMDSSSRNAGEMLDRLTLTYNSENPHEEC*(+) MKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDVPSVDVKKNVIVAITSDKG LCGGINSTSVKVSKALHKLTSGPEKESKYVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYTQ IAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGE TKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNSENPHEEC *(+) MFLTLFMRVLTVVCEGESIKHFTSVSAGAVHGRHTCSKLTACIL*(-) |
Sponge-miRNAs | osa-miR529a |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017 |