Detail information of AT3G07160_circ_g.17


General Information
CircRNA Name AT3G07160_circ_g.17
ID in PlantcircBase ath_circ_020252
Alias 3:2270533-2270917
Organism Arabidpsis thaliana
Position chr3: 2270533-2270917  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07160
Parent gene annotation Glucan synthase-like 10
Parent gene strand -
Alternative splicing AT3G07160_circ_g.4 AT3G07160_circ_g.5 AT3G07160_circ_g.6 AT3G07160_circ_g.7 AT3G07160_circ_g.8 AT3G07160_circ_g.9 AT3G07160_circ_g.10 AT3G07160_circ_g.11 AT3G07160_circ_g.12 AT3G07160_circ_g.13 AT3G07160_circ_g.14 AT3G07160_circ_g.15 AT3G07160_circ_g.16 AT3G07160_circ_g.18 AT3G07160_circ_g.19 AT3G07160_circ_g.20 AT3G07160_circ_g.21 AT3G07160_circ_g.22
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07160.1:2
AT3G07160.2:2
AT3G07160.3:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTGAAGATAAAACAGTATTGATATTCCATCCTCATTTCTCTTGGTGAGTTCAGCCATGCTG
TATAGCACAACCTCGGAATAGTATGGAGTGAAGACActgttctagctaacgtttgtccacggta
agaggcccaaaatcgaagttcaagtatgtctctttcattatctagatcgccttctaacgcattt
tcgtctcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 242
Transcript exons: 2270533-2270664,2270808-2270917
CTGTTCTAGCTAACGTTTGTCCACGGTAAGAGGCCCAAAATCGAAGTTCAAGTATGTCTCTTTC
ATTATCTAGATCGCCTTCTAACGCATTTTCGTCTCGTCCTATGCGTGCAAGAAAATTTTTCCAC
TCATCTGGATATATTTTCTGAAGATAAAACAGTATTGATATTCCATCCTCATTTCTCTTGGTGA
GTTCAGCCATGCTGTATAGCACAACCTCGGAATAGTATGGAGTGAAGACA

Genomic sequence CTGTTCTAGCTAACGTTTGTCCACGGTAAGAGGCCCAAAATCGAAGTTCAAGTATGTCTCTTTC
ATTATCTAGATCGCCTTCTAACGCATTTTCGTCTCGTCCTATGCGTGCAAGAAAATTTTTCCAC
TCATCTGCAACACATCAAATATCAATAAGAAACATTTAGGATCTACTATAACGGTAATACAATT
AAGTACAGAAAACATAACGAAGCGTAAGTAAGAAACATAAAAAACTAGGCAAGAGTCGCTAATC
TTTAAAAGGAATTGTATACCTGGATATATTTTCTGAAGATAAAACAGTATTGATATTCCATCCT
CATTTCTCTTGGTGAGTTCAGCCATGCTGTATAGCACAACCTCGGAATAGTATGGAGTGAAGAC
A
Conservation Information
Conserved circRNAs NA
PMCS 0.26117327
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020