Detail information of AT3G07160_circ_g.6


General Information
CircRNA Name AT3G07160_circ_g.6
ID in PlantcircBase ath_circ_020241
Alias 3:2267885-2268622
Organism Arabidpsis thaliana
Position chr3: 2267885-2268622  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07160
Parent gene annotation Glucan synthase-like 10
Parent gene strand -
Alternative splicing AT3G07160_circ_g.4 AT3G07160_circ_g.5 AT3G07160_circ_g.7 AT3G07160_circ_g.8 AT3G07160_circ_g.9 AT3G07160_circ_g.10 AT3G07160_circ_g.11 AT3G07160_circ_g.12 AT3G07160_circ_g.13 AT3G07160_circ_g.14 AT3G07160_circ_g.15 AT3G07160_circ_g.16 AT3G07160_circ_g.17 AT3G07160_circ_g.18 AT3G07160_circ_g.19 AT3G07160_circ_g.20 AT3G07160_circ_g.21 AT3G07160_circ_g.22
Support reads 1/1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07160.2:4
AT3G07160.3:4
AT3G07160.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGGTAGTAACTTACTTTAAGGGTTTTGCCAATACTCGTTGACCTAGAGTTACAAAGCTGGTT
TCTTGATTGGACATGAAAGATGCCAAGGAGGAGACAcattgtacatagatagaagccaacggtt
gtaaagaagaatgacatcatacggaagaaatcaaggagctggccaagtctgtatacatctcgac
taagaacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 427
Transcript exons: 2267885-2268061,2268130-2268182,2268343-2268455,2268539-
2268622
CATTGTACATAGATAGAAGCCAACGGTTGTAAAGAAGAATGACATCATACGGAAGAAATCAAGG
AGCTGGCCAAGTCTGTATACATCTCGACTAAGAACCTGTTCACCATTCCCACCAGCAACCTTCC
CTTCAAACAGAGCTATTTGATTGAGCCCAACATCTCGCCCTTTGCCCACCTGAATATACTCATG
ATGAGTAACATTCCCTTGACGTAGAGTTGTGTTGAAACCAGCAAATATATCTTCACTAATATTG
ATGACCCGAGAGGCCTTGCTGATACCACCACGTGTAATATGAAATACTCTGTCAAAGACATCTG
GATGACCATAATGCATGCGGATCTTTAAGGGTTTTGCCAATACTCGTTGACCTAGAGTTACAAA
GCTGGTTTCTTGATTGGACATGAAAGATGCCAAGGAGGAGACA

Genomic sequence CATTGTACATAGATAGAAGCCAACGGTTGTAAAGAAGAATGACATCATACGGAAGAAATCAAGG
AGCTGGCCAAGTCTGTATACATCTCGACTAAGAACCTGTTCACCATTCCCACCAGCAACCTTCC
CTTCAAACAGAGCTATTTGATTGAGCCCAACATCTCGCCCTTTGCCCACCTGTAAACAGAATTA
ATGCATATATATATTTTTATTATTTTAATTGTAAAGAGTTAAAAAGTACGGACCTGAATATACT
CATGATGAGTAACATTCCCTTGACGTAGAGTTGTGTTGAAACCTGGAAACCGTAGAGGCATATA
ATCAACGTCCATCATGTGTGGAAGAAATTGGTATTAAAAAATGGCTCAGAATTGCACTTTTCAT
TATTCATGTGTTTTTATATTCTTAAAACATCGAACAGTTTTGAAGGTAACTGTCAATTAAAAAA
TCAAATTTACCAGCAAATATATCTTCACTAATATTGATGACCCGAGAGGCCTTGCTGATACCAC
CACGTGTAATATGAAATACTCTGTCAAAGACATCTGGATGACCATAATGCATGCGGATCCTAGA
ATTCAGAAATAATAGAATAAGGATTCCATCTGAGTTCAAGTTGTTCACGGAAGATAAAAATTAT
TGGTAGTAACTTACTTTAAGGGTTTTGCCAATACTCGTTGACCTAGAGTTACAAAGCTGGTTTC
TTGATTGGACATGAAAGATGCCAAGGAGGAGACA
Conservation Information
Conserved circRNAs NA
PMCS 0.398043934
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020