Detail information of AT3G07160_circ_g.11


General Information
CircRNA Name AT3G07160_circ_g.11
ID in PlantcircBase ath_circ_020246
Alias 3:2269898-2270336
Organism Arabidpsis thaliana
Position chr3: 2269898-2270336  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07160
Parent gene annotation Glucan synthase-like 10
Parent gene strand -
Alternative splicing AT3G07160_circ_g.4 AT3G07160_circ_g.5 AT3G07160_circ_g.6 AT3G07160_circ_g.7 AT3G07160_circ_g.8 AT3G07160_circ_g.9 AT3G07160_circ_g.10 AT3G07160_circ_g.12 AT3G07160_circ_g.13 AT3G07160_circ_g.14 AT3G07160_circ_g.15 AT3G07160_circ_g.16 AT3G07160_circ_g.17 AT3G07160_circ_g.18 AT3G07160_circ_g.19 AT3G07160_circ_g.20 AT3G07160_circ_g.21 AT3G07160_circ_g.22
Support reads 2
Tissues seedling
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT3G07160.3:2
AT3G07160.2:2
AT3G07160.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTTGGGCCCTTGCTTCTGGAGATAACTCAAATCCTTCAGCGTCTGTAGCGTCATTGCCAGCT
TTTCTTTCCAGATAAGACTGAAGCATGAGGGCTTTCcttatcctttccactgatgtcggccttc
acaagttttgaataatattccgtatgagatttaccctcttttggactatcaacaacatcaatat
aagcaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATCCTTTCCACTGATGTCGGCCTTCACAAGTTTTGAATAATATTCCGTATGAGATTTACCC
TCTTTTGGACTATCAACAACATCAATATAAGCAATGCGAAGGGCTTCATTTCTGACAATAGAAT
GAAAAAGATTAGCTTAATAATACAATAACAGAATGATAACAGACGCACTAGACCTGAGATAGAA
AAGTCCATCTCCTTAACCAACAGTGGAATCCAGAAAAGTCTTTTCTTACCTTTGCATTAGCAAT
GCAATGTCAACAGCTTCAGGTTTTTGATCTTCTTTTTGTCTTCCATATATCTGGCATGTGACAA
CATATGTGAACTTGAGATCTGCTTGGGCCCTTGCTTCTGGAGATAACTCAAATCCTTCAGCGTC
TGTAGCGTCATTGCCAGCTTTTCTTTCCAGATAAGACTGAAGCATGAGGGCTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.219074963
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020