Detail information of AT3G07160_circ_g.22


General Information
CircRNA Name AT3G07160_circ_g.22
ID in PlantcircBase ath_circ_020257
Alias NA
Organism Arabidpsis thaliana
Position chr3: 2272731-2272963  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder, circRNA_finder
Parent gene AT3G07160
Parent gene annotation Glucan synthase-like 10
Parent gene strand -
Alternative splicing AT3G07160_circ_g.4 AT3G07160_circ_g.5 AT3G07160_circ_g.6 AT3G07160_circ_g.7 AT3G07160_circ_g.8 AT3G07160_circ_g.9 AT3G07160_circ_g.10 AT3G07160_circ_g.11 AT3G07160_circ_g.12 AT3G07160_circ_g.13 AT3G07160_circ_g.14 AT3G07160_circ_g.15 AT3G07160_circ_g.16 AT3G07160_circ_g.17 AT3G07160_circ_g.18 AT3G07160_circ_g.19 AT3G07160_circ_g.20 AT3G07160_circ_g.21
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07160.3:2
AT3G07160.2:2
AT3G07160.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAGGAACCTAACCGATTGGTAAGAGGAACATGAAGAGCCCTCATAAAAGCCCCTGGAAACTC
CTCAAAGAGTTTATGAATCGCTTCCAAAGATCTTATctgatgagaagtatcagacgtcctgcac
atgatattgaatcataggcaaaagaaatgaaaacgagaaaatgttaatatttaacaaagataaa
tggaggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATGAGAAGTATCAGACGTCCTGCACATGATATTGAATCATAGGCAAAAGAAATGAAAACGA
GAAAATGTTAATATTTAACAAAGATAAATGGAGGAATACAGGAAAAATGATGTTCGTGGATAGG
AGATGGAAAGGAACCTAACCGATTGGTAAGAGGAACATGAAGAGCCCTCATAAAAGCCCCTGGA
AACTCCTCAAAGAGTTTATGAATCGCTTCCAAAGATCTTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.191159475
Functional Information
Coding potential Y
Potential coding position 2272910-2272733(-)
2272734-2272960(+)
Potential amino acid sequence MRALHVPLTNRTSDTSHQIRSLEAIHKLFEEFPGAFMRALHVPLTNRTSDTSHQIRSLEAIHKL
FEEFPGAFMRALHVPLTNRTSDTSHQIRSLEAIHKLFEEFPGAFMRALHVPLTNRTSDTSHQ(-
)
MRSIRRPIGKRNMKSPHKSPWKLLKEFMNRFQRSYLMRSIRRPIGKRNMKSPHKSPWKLLKEFM
NRFQRSYLMRSIRRPIGKRNMKSPHKSPWKLLKEFMNRFQRSYLMRSIRRPIGKRNMKSPHKSP
WKLLKEFMNRFQRSY(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017