Detail information of AT3G07160_circ_g.4


General Information
CircRNA Name AT3G07160_circ_g.4
ID in PlantcircBase ath_circ_020239
Alias NA
Organism Arabidpsis thaliana
Position chr3: 2267885-2268061  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT3G07160
Parent gene annotation Glucan synthase-like 10
Parent gene strand -
Alternative splicing AT3G07160_circ_g.5 AT3G07160_circ_g.6 AT3G07160_circ_g.7 AT3G07160_circ_g.8 AT3G07160_circ_g.9 AT3G07160_circ_g.10 AT3G07160_circ_g.11 AT3G07160_circ_g.12 AT3G07160_circ_g.13 AT3G07160_circ_g.14 AT3G07160_circ_g.15 AT3G07160_circ_g.16 AT3G07160_circ_g.17 AT3G07160_circ_g.18 AT3G07160_circ_g.19 AT3G07160_circ_g.20 AT3G07160_circ_g.21 AT3G07160_circ_g.22
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07160.3:1
AT3G07160.1:1
AT3G07160.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTAAGAACCTGTTCACCATTCCCACCAGCAACCTTCCCTTCAAACAGAGCTATTTGATTGAG
CCCAACATCTCGCCCTTTGCCCACcattgtacatagatagaagccaacggttgtaaagaagaat
gacatcatacggaagaaatcaaggagctggccaagtctgtatacatctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTGTACATAGATAGAAGCCAACGGTTGTAAAGAAGAATGACATCATACGGAAGAAATCAAGG
AGCTGGCCAAGTCTGTATACATCTCGACTAAGAACCTGTTCACCATTCCCACCAGCAACCTTCC
CTTCAAACAGAGCTATTTGATTGAGCCCAACATCTCGCCCTTTGCCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.271184605
Functional Information
Coding potential Y
Potential coding position 2267933-2267887(-)
Potential amino acid sequence MMSFFFTTVGFYLCTMVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDVYRLGQLLDFFRMMSFF
FTTVGFYLCTMVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDVYRLGQLLDFFRMMSFFFTTVG
FYLCTMVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDVYRLGQLLDFFRMMSFFFTTVGFYLCT
M(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017