Detail information of Os03g0262300_circ_g.10


General Information
CircRNA Name Os03g0262300_circ_g.10
ID in PlantcircBase osa_circ_018985
Alias NA
Organism Oryza sativa
Position chr3: 8592904-8594774  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0262300
Parent gene annotation Hypothetical conserved gene. (Os03t0262300-01)
Parent gene strand -
Alternative splicing Os03g0262300_circ_g.3 Os03g0262300_circ_g.4 Os03g0262300_circ_g.5 Os03g0262300_circ_g.6 Os03g0262300_circ_g.7 Os03g0262300_circ_g.8 Os03g0262300_circ_g.9
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0262300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGATTCCAATGCTTTGCAGTGCTTTCGGTTCGGAACCTTCAGTGCTGCACCCTGATTCTTAC
CCCTGCCTTTCCTCTGTTTTTTCTGAGGGCTTTCATcacatcctgagaagaaaacttgcttttg
ttttgtttgtcatgaaagttagccaaatgttttcctggatctgcatgctctgcagaattctgct
cagtggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACATCCTGAGAAGAAAACTTGCTTTTGTTTTGTTTGTCATGAAAGTTAGCCAAATGTTTTCCT
GGATCTGCATGCTCTGCAGAATTCTGCTCAGTGGTACTAGTGCCAAGAAAAGATTTGTCGGCAA
TTAGCCATTTGTTACTCCAGTGAATTGGCATAGTGACCTGTAACACACATACACACACACAGAT
GTTCAGTCGCATTAGACAAACCACCCTAAGGCGGACCACAAAAGCACAAAGGTGAGATACATTA
TGGAACCAGATGAACAAAATATATGTTTTTATATAGACACACCTCCAGTTCGTACAAAACATGA
ACAGGACATAAAGGTGGGTCTCTTTCAAAAGCACAAAGTGAATCCATATCCTCATCCTCAACAT
TAAGAATATCTTGGCCAGCACCTTTGTGTATTTTCCGAGAAGCAAAAAATGGATGCATTTTCTT
TCCAGATGATAACCTCCGATTTTCCTGGCAATGAATAATATGAACTTTTCAGACAAGAACAATC
TTGGAATCAACAGAAGAGTAAAACAGCAACCATGACTTTTTTTTTCCCGAGGAACACTCAAATT
GAGTATATTAAGATCCAAGACGTTGTAAAACATTGGAGGATGATTCACACAGACAGAAGTTAAG
CTTATTTTAATACCCGACTGTACTGCTTAACAATAATAAGACAATATTTCTTAAACAATTGTTG
TTGTTTTAAGAAAATGTATGCAATTCAGAGAACATTATAATGTAGTACAAAGCCTAAATTCAAT
ATAATAAATATTATAAATATAAACTTGTGCAGGGCCCAAAAGCCATGAACAAATATACAGTATT
CAACCAAACATAAGGCAACCACCGCAACCACAAAGGACAAGTATCCACTGTCTGAATTATTAGT
AACATTTTACGTTTTACCTTTGCTTGAGATGACAAGGTGGGCATCCAAATGACTACAGATCTAA
ACTTGCAATAAGCATGATAGAACACCCAATTTTCAATTGATTATCGAATAGTCAGAATATTCTT
AATGAATTATTGAGACAATAGTCAAAAGGAAGGTATAAAACAAAAAGACCAAAAGACTACATAC
AGTATCTCAAATCAAACATTGGCATGGGGCATACCTCTGCAGCTATATTTGCCTCTGACCTTAG
ATCAACTATCAACTGTGGCTTATCTTCATTGTCTAGTGCATCAACATTATCATTAACCGGACTT
GCTTCAGATGGGCCGGTCACCAAATCAATATCAACTGATGTGGGTGATTTTTGAGGCAAGACAG
CTTGAGTCTGACTGCTGCGTAGTTGCTGACAACTTTCATGACCTGCACAAGCAAAAGAAAGGCT
CATTGCACTTTTTCAAAAGTAGAGTAGGTAGAGATACAATCGCAGCTAAACAATGGCATTGAGT
TAACTTCAATTGAGCAGCCATGGCATATATTATTCTTTATATGCACAACAGCATGTGCAAGCAA
ATGACTATAAACTCAGACTGTTTTGACACTCAATAGTTGGATATTATTTTTTGTTAAACTCAAA
TTGTCGAATGCACGGATTATTTAATACTAATAGTGCGAATGGTGTTCAATATGTGTTTCCTGAA
CACTTGGTAGAAGTGTATTTTTTTTATTTTTTTTCAATTGTACAAACCAACATGGTAGGGTACT
TCTACAGAGAAACTCAACAGTATCAAATCACCAACAATATTCACACATGCATGCGTGCGCGCGA
GCACAGAAATGTGTGTGTGGTGACGGCTAAGTGCTCACCATCAGTAGATTCCAATGCTTTGCAG
TGCTTTCGGTTCGGAACCTTCAGTGCTGCACCCTGATTCTTACCCCTGCCTTTCCTCTGTTTTT
TCTGAGGGCTTTCAT
Conservation Information
Conserved circRNAs osi_circ_004701*
PMCS 0.100243952
Functional Information
Coding potential Y
Potential coding position 8594222-8592910(+)
8594686-8593032(+)
8593347-8594717(-)
Potential amino acid sequence MTISRFQCFAVLSVRNLQCCTLILTPAFPLFFLRAFITS*(+)
MLCSAFGSEPSVLHPDSYPCLSSVFSEGFHHILRRKLAFVLFVMKVSQMFSWICMLCRILLSGT
SAKKRFVGN*(+)
MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK
SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVMKALRKNRGKAGVRIRVQH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017