Detail information of Os03g0262300_circ_g.7


General Information
CircRNA Name Os03g0262300_circ_g.7
ID in PlantcircBase osa_circ_018982
Alias Os_ciR9199
Organism Oryza sativa
Position chr3: 8588433-8594774  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0262300
Parent gene annotation Hypothetical conserved gene. (Os03t0262300-01)
Parent gene strand -
Alternative splicing Os03g0262300_circ_g.3 Os03g0262300_circ_g.4 Os03g0262300_circ_g.5 Os03g0262300_circ_g.6 Os03g0262300_circ_g.8 Os03g0262300_circ_g.9 Os03g0262300_circ_g.10
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0262300-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGATTCCAATGCTTTGCAGTGCTTTCGGTTCGGAACCTTCAGTGCTGCACCCTGATTCTTAC
CCCTGCCTTTCCTCTGTTTTTTCTGAGGGCTTTCATcatttttctagaccatgtgatttagttg
cttcctcgaacttctgccttacataagccccatttctcatatcggatgtatttacctagaaaaa
cgtcacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.093151664
Functional Information
Coding potential Y
Potential coding position 8594686-8588483(+)
8594222-8588454(+)
8588437-8594717(-)
Potential amino acid sequence MLCSAFGSEPSVLHPDSYPCLSSVFSEGFHHFSRPCDLVASSNFCLT*(+)
MTISRFQCFAVLSVRNLQCCTLILTPAFPLFFLRAFIIFLDHVI*(+)
MMKALRKNRGKAGVRIRVQH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015