Detail information of Os03g0262300_circ_g.8


General Information
CircRNA Name Os03g0262300_circ_g.8
ID in PlantcircBase osa_circ_018983
Alias NA
Organism Oryza sativa
Position chr3: 8590449-8593375  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0262300
Parent gene annotation Hypothetical conserved gene. (Os03t0262300-01)
Parent gene strand -
Alternative splicing Os03g0262300_circ_g.3 Os03g0262300_circ_g.4 Os03g0262300_circ_g.5 Os03g0262300_circ_g.6 Os03g0262300_circ_g.7 Os03g0262300_circ_g.9 Os03g0262300_circ_g.10
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0262300-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCCTCAACATTAAGAATATCTTGGCCAGCACCTTTGTGTATTTTCCGAGAAGCAAAAAATGG
ATGCATTTTCTTTCCAGATGATAACCTCCGATTTTCctcaattacattgaatccttgttctctc
gcacatgcaaaaactgcggctgattttccacactgtaaaaatgaacaaagagaatgaagaagca
gctttgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAATTACATTGAATCCTTGTTCTCTCGCACATGCAAAAACTGCGGCTGATTTTCCACACTGT
AAAAATGAACAAAGAGAATGAAGAAGCAGCTTTGCAGCTGGGAACAAAACTGATTGCTTATAGG
TTGGTACACCTTTTTTTTCAAGTACAGCATACAAAAATATATAATAGAATACTATAGGAGCATC
AATTGATTGCAGCCAGTAATCTTATGTTACCACACCTTCATGTGGAGAAAAAAGTGGTCGAAAA
CTTACTATTCTGCCTAGACGTAGCTTAGTACTTTCAAACGTACAGACCAATTCAAATTCCCGAC
AAGTTCCAGGGGGTGTAAAAATTATTGTCCCGAGCTCAAACAAATAAGATAAGGCTCCCCCCCC
CTCTTCCCCTCTCACACACACAAACCCCCCACAAAACACACACGCACGCGAACACACAAGGAGA
TGATGCCCAGCAAATTCAAAAGAAAAAACAAAACAATACGTGAAGCATACAATGCAAACGGCAA
GTAATCTTCAAAATGGAACTCACCCCAACTGGTCCAGTAATTAGAAGCACATTCTCATAATCAG
AAGCATCTTCTGAATAATCTGTATCAGAACCATCTTGACAGGATCTACCATTCATGCTCCCGTT
AGTAACTATATTCTGTTTATTTCTGTGACCTCTTTCATCCCACCCTTTAAGCCACTCATTGAGG
AATTTTACATGCTTGGAATTACCACAAACCTGATCAACCAAGATAAAATAGTAATCTCAGAGCA
AGTATAACCATATCTGAAGGTATTATTTTGTGAGTTCATAAAAATAGCATGTTGGCTAAAAAAC
CTGATCAAATAGAAACAATTGGAAACAGGCAGCGAGATTTTATTATGAAATATATGATTCGTAC
TGCCAATATGTAGAATAAATTGTGATGTTTACCTGTGCAGCAGTTTCAGGCCGGTACTTGTCAG
TCCATAGGTTAGCTGTCTGACAGCTACAAGAGCAAATATTATGTTATTTGCCATCAAACCTATA
GAGATAAAGGCTGATGCAAAAAATATATCATGCAAAATCTAGATTATTGACACTAGCTCAGTTG
ACCTATTGGCTACAACAAAACAATGAAAATTTTCATGCCACCATCAATAATGAAATCAACAGTT
TTTTTTTCAGAAATGGCAGTCATAAAAAGACAACTATGCGGTGCCAGCAGCATTTTACTTTGCA
TTATTGTGTTACGCTGATTGACACTATCAGGCCATTAGTAATGTGCAACTCAAAAGGGATAGAA
ATATATGAGGAATGGAGCACAATTGATGCAAATTTAAGTACTATTATATTGTGCAATAGGCTAC
ATTCCATAAAGAAATTGTTAGAGTATATGGTAGTTAGAGGGATGTTAGGATAGGATTGATTTGT
ATCATAGTCTTCCTTATCTCTAGATCCCCTTATCTCTTGTACTCTATACAGTATATACCAGCCC
CCTAAGTCTCAATACAATCGTCCAGTTACATAGTATATTTCTCTCCCTCAACTATTCAACAGAA
ATATTATGAGGTAGGCTATCAAAGAAAAGATAATAGGACATAGAACCAGTAGGTGCCAAGAAAA
GAATGAACATGAAAACAACGTAAGTGTAAAACAAAGTAGCATCCTAATGGCTGACACCACTTAA
GTGAGCATTAAAACAGACACCAAACAGAGGGCGGGCTTGTTTGCTACTCCCTCCATTCCAAAAT
ATAAGGCACAACTATCACTAACACGAAGACTAAAAAAATATTATTTTCACTTTCTCGTTTGGAT
CACCCCAATAAATGAAATGCATGCACCCAATGGGATCAAGGATCTTGAGGGTAGGGGATTTTTG
TTATTAAAAAAAATAGGGGAGGGGTGTGTGCTAGTTAATTGCATGCATGAATGCATGCCCTCCC
AGTCAAAAAAAAAATGCATGCTCTGTACTATGGAACATCAAAAAAAAAGTTGTGCCCTATATTT
TGGAATGGAGGGAGTATTAATTTTGACCAGTACTTGTGAGTGTCAGGAGTTTACGCTTTGCAAC
TTCATAGGCTGGTGAGGTTCAAATGATTATTGATTTTCTTTTTCATTTGTGATCTGAAGGCAAA
ATTAAGACAACAAGAAGAAAGGTAGTCCTGTCCAGCACACATCAAGGCAAATAGTGTCCAATGC
AGTTTACCCTTTCGGAGTGACTTCAGGCAATTCATGCTGTACCCTTTCGTGTTGTTTGCTTTCA
AAAAGAGAGGCATGGAAACAGGAACTAGATGCTAACAGGCACTCATCATCAACATCAATCTGTG
GAGAAAAGCAAATGGTTGTGTTTAAATCAAGATTAGCGCATGATTAGAACAAGAAATTCACTGG
CTATAAAACCAAAAATCTATAACAGACGCACAAAGCAAACTCCTTCAAATGCTTCAAAAAAGAT
CAATGGGAAAAGGAAACTTGTACCACATCCTGAGAAGAAAACTTGCTTTTGTTTTGTTTGTCAT
GAAAGTTAGCCAAATGTTTTCCTGGATCTGCATGCTCTGCAGAATTCTGCTCAGTGGTACTAGT
GCCAAGAAAAGATTTGTCGGCAATTAGCCATTTGTTACTCCAGTGAATTGGCATAGTGACCTGT
AACACACATACACACACACAGATGTTCAGTCGCATTAGACAAACCACCCTAAGGCGGACCACAA
AAGCACAAAGGTGAGATACATTATGGAACCAGATGAACAAAATATATGTTTTTATATAGACACA
CCTCCAGTTCGTACAAAACATGAACAGGACATAAAGGTGGGTCTCTTTCAAAAGCACAAAGTGA
ATCCATATCCTCATCCTCAACATTAAGAATATCTTGGCCAGCACCTTTGTGTATTTTCCGAGAA
GCAAAAAATGGATGCATTTTCTTTCCAGATGATAACCTCCGATTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.10311585
Functional Information
Coding potential Y
Potential coding position 8593347-8590451(-)
Potential amino acid sequence MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK
SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQH
ERVQHELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTN
GSMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEENRRLSSGKK
MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK
SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQH
ERVQHELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTN
GSMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEENRRLSSGKK
MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK
SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQH
ERVQHELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTN
GSMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEENRRLSSGKK
MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK
SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQH
ERVQHELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTN
GSMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017