Detail information of Os03g0262300_circ_g.5


General Information
CircRNA Name Os03g0262300_circ_g.5
ID in PlantcircBase osa_circ_041320
Alias NA
Organism Oryza sativa
Position chr3: 8586951-8587194  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os03g0262300
Parent gene annotation Hypothetical conserved gene. (Os03t0262300-01)
Parent gene strand -
Alternative splicing Os03g0262300_circ_g.3 Os03g0262300_circ_g.4 Os03g0262300_circ_g.6 Os03g0262300_circ_g.7 Os03g0262300_circ_g.8 Os03g0262300_circ_g.9 Os03g0262300_circ_g.10
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os03t0262300-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTAATCAAATGAAATTTCGAAGGATGGTAGAGATGTACAAAATCCTAAAGACAAAAAGGCTT
ACTGTTACTGGTCAGTATGATTGGCCATTTTGTAGTcatgtcgacatgtgaaagtaactctgca
gatgatgggtatgtgaaatccaatactagctgagccaagagatgaggcaatggcggatctttct
cttcagga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 126
Transcript exons: 8586951-8587042,8587161-8587194
CATGTCGACATGTGAAAGTAACTCTGCAGATGATGGGTATGTGAAATCCAATACTAGCTGAGCC
AAGAGATGAGGCAATGGCGGATCTTTCTTGTTACTGGTCAGTATGATTGGCCATTTTGTAGT

Genomic sequence CATGTCGACATGTGAAAGTAACTCTGCAGATGATGGGTATGTGAAATCCAATACTAGCTGAGCC
AAGAGATGAGGCAATGGCGGATCTTTCTCTTCAGGAAATATAAAGACAAAAACAACAAAATAAC
AAGAGCTTTAGTATGCTCTTAATCAAATGAAATTTCGAAGGATGGTAGAGATGTACAAAATCCT
AAAGACAAAAAGGCTTACTGTTACTGGTCAGTATGATTGGCCATTTTGTAGT
Conservation Information
Conserved circRNAs NA
PMCS 0.173521653
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study