Detail information of Os03g0262300_circ_g.9


General Information
CircRNA Name Os03g0262300_circ_g.9
ID in PlantcircBase osa_circ_018984
Alias NA
Organism Oryza sativa
Position chr3: 8590449-8595018  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0262300
Parent gene annotation Hypothetical conserved gene. (Os03t0262300-01)
Parent gene strand -
Alternative splicing Os03g0262300_circ_g.3 Os03g0262300_circ_g.4 Os03g0262300_circ_g.5 Os03g0262300_circ_g.6 Os03g0262300_circ_g.7 Os03g0262300_circ_g.8 Os03g0262300_circ_g.10
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0262300-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGGCATGTGTAGACCAAGTACAGGATTGACATACCAACCAAAATCACTTCATCCTTACTATC
TTGCTCCAGACCAGTTGTCTCTCTGTTTGAAGACGGctcaattacattgaatccttgttctctc
gcacatgcaaaaactgcggctgattttccacactgtaaaaatgaacaaagagaatgaagaagca
gctttgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAATTACATTGAATCCTTGTTCTCTCGCACATGCAAAAACTGCGGCTGATTTTCCACACTGT
AAAAATGAACAAAGAGAATGAAGAAGCAGCTTTGCAGCTGGGAACAAAACTGATTGCTTATAGG
TTGGTACACCTTTTTTTTCAAGTACAGCATACAAAAATATATAATAGAATACTATAGGAGCATC
AATTGATTGCAGCCAGTAATCTTATGTTACCACACCTTCATGTGGAGAAAAAAGTGGTCGAAAA
CTTACTATTCTGCCTAGACGTAGCTTAGTACTTTCAAACGTACAGACCAATTCAAATTCCCGAC
AAGTTCCAGGGGGTGTAAAAATTATTGTCCCGAGCTCAAACAAATAAGATAAGGCTCCCCCCCC
CTCTTCCCCTCTCACACACACAAACCCCCCACAAAACACACACGCACGCGAACACACAAGGAGA
TGATGCCCAGCAAATTCAAAAGAAAAAACAAAACAATACGTGAAGCATACAATGCAAACGGCAA
GTAATCTTCAAAATGGAACTCACCCCAACTGGTCCAGTAATTAGAAGCACATTCTCATAATCAG
AAGCATCTTCTGAATAATCTGTATCAGAACCATCTTGACAGGATCTACCATTCATGCTCCCGTT
AGTAACTATATTCTGTTTATTTCTGTGACCTCTTTCATCCCACCCTTTAAGCCACTCATTGAGG
AATTTTACATGCTTGGAATTACCACAAACCTGATCAACCAAGATAAAATAGTAATCTCAGAGCA
AGTATAACCATATCTGAAGGTATTATTTTGTGAGTTCATAAAAATAGCATGTTGGCTAAAAAAC
CTGATCAAATAGAAACAATTGGAAACAGGCAGCGAGATTTTATTATGAAATATATGATTCGTAC
TGCCAATATGTAGAATAAATTGTGATGTTTACCTGTGCAGCAGTTTCAGGCCGGTACTTGTCAG
TCCATAGGTTAGCTGTCTGACAGCTACAAGAGCAAATATTATGTTATTTGCCATCAAACCTATA
GAGATAAAGGCTGATGCAAAAAATATATCATGCAAAATCTAGATTATTGACACTAGCTCAGTTG
ACCTATTGGCTACAACAAAACAATGAAAATTTTCATGCCACCATCAATAATGAAATCAACAGTT
TTTTTTTCAGAAATGGCAGTCATAAAAAGACAACTATGCGGTGCCAGCAGCATTTTACTTTGCA
TTATTGTGTTACGCTGATTGACACTATCAGGCCATTAGTAATGTGCAACTCAAAAGGGATAGAA
ATATATGAGGAATGGAGCACAATTGATGCAAATTTAAGTACTATTATATTGTGCAATAGGCTAC
ATTCCATAAAGAAATTGTTAGAGTATATGGTAGTTAGAGGGATGTTAGGATAGGATTGATTTGT
ATCATAGTCTTCCTTATCTCTAGATCCCCTTATCTCTTGTACTCTATACAGTATATACCAGCCC
CCTAAGTCTCAATACAATCGTCCAGTTACATAGTATATTTCTCTCCCTCAACTATTCAACAGAA
ATATTATGAGGTAGGCTATCAAAGAAAAGATAATAGGACATAGAACCAGTAGGTGCCAAGAAAA
GAATGAACATGAAAACAACGTAAGTGTAAAACAAAGTAGCATCCTAATGGCTGACACCACTTAA
GTGAGCATTAAAACAGACACCAAACAGAGGGCGGGCTTGTTTGCTACTCCCTCCATTCCAAAAT
ATAAGGCACAACTATCACTAACACGAAGACTAAAAAAATATTATTTTCACTTTCTCGTTTGGAT
CACCCCAATAAATGAAATGCATGCACCCAATGGGATCAAGGATCTTGAGGGTAGGGGATTTTTG
TTATTAAAAAAAATAGGGGAGGGGTGTGTGCTAGTTAATTGCATGCATGAATGCATGCCCTCCC
AGTCAAAAAAAAAATGCATGCTCTGTACTATGGAACATCAAAAAAAAAGTTGTGCCCTATATTT
TGGAATGGAGGGAGTATTAATTTTGACCAGTACTTGTGAGTGTCAGGAGTTTACGCTTTGCAAC
TTCATAGGCTGGTGAGGTTCAAATGATTATTGATTTTCTTTTTCATTTGTGATCTGAAGGCAAA
ATTAAGACAACAAGAAGAAAGGTAGTCCTGTCCAGCACACATCAAGGCAAATAGTGTCCAATGC
AGTTTACCCTTTCGGAGTGACTTCAGGCAATTCATGCTGTACCCTTTCGTGTTGTTTGCTTTCA
AAAAGAGAGGCATGGAAACAGGAACTAGATGCTAACAGGCACTCATCATCAACATCAATCTGTG
GAGAAAAGCAAATGGTTGTGTTTAAATCAAGATTAGCGCATGATTAGAACAAGAAATTCACTGG
CTATAAAACCAAAAATCTATAACAGACGCACAAAGCAAACTCCTTCAAATGCTTCAAAAAAGAT
CAATGGGAAAAGGAAACTTGTACCACATCCTGAGAAGAAAACTTGCTTTTGTTTTGTTTGTCAT
GAAAGTTAGCCAAATGTTTTCCTGGATCTGCATGCTCTGCAGAATTCTGCTCAGTGGTACTAGT
GCCAAGAAAAGATTTGTCGGCAATTAGCCATTTGTTACTCCAGTGAATTGGCATAGTGACCTGT
AACACACATACACACACACAGATGTTCAGTCGCATTAGACAAACCACCCTAAGGCGGACCACAA
AAGCACAAAGGTGAGATACATTATGGAACCAGATGAACAAAATATATGTTTTTATATAGACACA
CCTCCAGTTCGTACAAAACATGAACAGGACATAAAGGTGGGTCTCTTTCAAAAGCACAAAGTGA
ATCCATATCCTCATCCTCAACATTAAGAATATCTTGGCCAGCACCTTTGTGTATTTTCCGAGAA
GCAAAAAATGGATGCATTTTCTTTCCAGATGATAACCTCCGATTTTCCTGGCAATGAATAATAT
GAACTTTTCAGACAAGAACAATCTTGGAATCAACAGAAGAGTAAAACAGCAACCATGACTTTTT
TTTTCCCGAGGAACACTCAAATTGAGTATATTAAGATCCAAGACGTTGTAAAACATTGGAGGAT
GATTCACACAGACAGAAGTTAAGCTTATTTTAATACCCGACTGTACTGCTTAACAATAATAAGA
CAATATTTCTTAAACAATTGTTGTTGTTTTAAGAAAATGTATGCAATTCAGAGAACATTATAAT
GTAGTACAAAGCCTAAATTCAATATAATAAATATTATAAATATAAACTTGTGCAGGGCCCAAAA
GCCATGAACAAATATACAGTATTCAACCAAACATAAGGCAACCACCGCAACCACAAAGGACAAG
TATCCACTGTCTGAATTATTAGTAACATTTTACGTTTTACCTTTGCTTGAGATGACAAGGTGGG
CATCCAAATGACTACAGATCTAAACTTGCAATAAGCATGATAGAACACCCAATTTTCAATTGAT
TATCGAATAGTCAGAATATTCTTAATGAATTATTGAGACAATAGTCAAAAGGAAGGTATAAAAC
AAAAAGACCAAAAGACTACATACAGTATCTCAAATCAAACATTGGCATGGGGCATACCTCTGCA
GCTATATTTGCCTCTGACCTTAGATCAACTATCAACTGTGGCTTATCTTCATTGTCTAGTGCAT
CAACATTATCATTAACCGGACTTGCTTCAGATGGGCCGGTCACCAAATCAATATCAACTGATGT
GGGTGATTTTTGAGGCAAGACAGCTTGAGTCTGACTGCTGCGTAGTTGCTGACAACTTTCATGA
CCTGCACAAGCAAAAGAAAGGCTCATTGCACTTTTTCAAAAGTAGAGTAGGTAGAGATACAATC
GCAGCTAAACAATGGCATTGAGTTAACTTCAATTGAGCAGCCATGGCATATATTATTCTTTATA
TGCACAACAGCATGTGCAAGCAAATGACTATAAACTCAGACTGTTTTGACACTCAATAGTTGGA
TATTATTTTTTGTTAAACTCAAATTGTCGAATGCACGGATTATTTAATACTAATAGTGCGAATG
GTGTTCAATATGTGTTTCCTGAACACTTGGTAGAAGTGTATTTTTTTTATTTTTTTTCAATTGT
ACAAACCAACATGGTAGGGTACTTCTACAGAGAAACTCAACAGTATCAAATCACCAACAATATT
CACACATGCATGCGTGCGCGCGAGCACAGAAATGTGTGTGTGGTGACGGCTAAGTGCTCACCAT
CAGTAGATTCCAATGCTTTGCAGTGCTTTCGGTTCGGAACCTTCAGTGCTGCACCCTGATTCTT
ACCCCTGCCTTTCCTCTGTTTTTTCTGAGGGCTTTCATCTGAAATTCAGGTCAAATATTCAAAT
GTGATATTTCTGGCATGATATCACCTGTTGCGTGCCAGTCACAATGTATAGTAAATACATAACA
GAATAATGACCAGACTGGTGAAGCACTTAAGAAGTTAATAGAAATGATAAAAATATGGGCATGT
GTAGACCAAGTACAGGATTGACATACCAACCAAAATCACTTCATCCTTACTATCTTGCTCCAGA
CCAGTTGTCTCTCTGTTTGAAGACGG
Conservation Information
Conserved circRNAs NA
PMCS 0.096814415
Functional Information
Coding potential Y
Potential coding position 8594686-8590459(+)
8593347-8590451(-)
Potential amino acid sequence MLCSAFGSEPSVLHPDSYPCLSSVFSEGFHQPKSLHPYYLAPDQLSLCLKTAQLH*(+)
MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK
SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQH
ERVQHELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTN
GSMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEPSSNRETTGL
EQDSKDEVILVDESPQKKQRKGRGKNQGAALKVPNRKHCKALESTDGHESCQQLRSSQTQAVLP
QKSPTSVDIDLVTGPSEASPVNDNVDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFF
ASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADKSFLGT
STTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQHERVQH
ELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNG
RSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEPSSNRETTGLEQDSK
DEVILVDESPQKKQRKGRGKNQGAALKVPNRKHCKALESTDGHESCQQLRSSQTQAVLPQKSPT
SVDIDLVTGPSEASPVNDNVDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFFASRKI
HKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADKSFLGTSTTEQ
NSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQHERVQHELPEV
TPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQD
GSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEPSSNRETTGLEQDSKDEVIL
VDESPQKKQRKGRGKNQGAALKVPNRKHCKALESTDGHESCQQLRSSQTQAVLPQKSPTSVDID
LVTGPSEASPVNDNVDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFFASRKIHKGAG
QDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADKSFLGTSTTEQNSAEH
ADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQHERVQHELPEVTPKGC
QTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQDGSDTD
YSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017