Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os03g0262300_circ_g.9 |
| ID in PlantcircBase | osa_circ_018984 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr3: 8590449-8595018 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os03g0262300 |
| Parent gene annotation |
Hypothetical conserved gene. (Os03t0262300-01) |
| Parent gene strand | - |
| Alternative splicing | Os03g0262300_circ_g.3 Os03g0262300_circ_g.4 Os03g0262300_circ_g.5 Os03g0262300_circ_g.6 Os03g0262300_circ_g.7 Os03g0262300_circ_g.8 Os03g0262300_circ_g.10 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os03t0262300-01:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.096814415 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
8594686-8590459(+) 8593347-8590451(-) |
| Potential amino acid sequence |
MLCSAFGSEPSVLHPDSYPCLSSVFSEGFHQPKSLHPYYLAPDQLSLCLKTAQLH*(+) MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQH ERVQHELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTN GSMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEPSSNRETTGL EQDSKDEVILVDESPQKKQRKGRGKNQGAALKVPNRKHCKALESTDGHESCQQLRSSQTQAVLP QKSPTSVDIDLVTGPSEASPVNDNVDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFF ASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADKSFLGT STTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQHERVQH ELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNG RSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEPSSNRETTGLEQDSK DEVILVDESPQKKQRKGRGKNQGAALKVPNRKHCKALESTDGHESCQQLRSSQTQAVLPQKSPT SVDIDLVTGPSEASPVNDNVDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFFASRKI HKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADKSFLGTSTTEQ NSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQHERVQHELPEV TPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQD GSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEPSSNRETTGLEQDSKDEVIL VDESPQKKQRKGRGKNQGAALKVPNRKHCKALESTDGHESCQQLRSSQTQAVLPQKSPTSVDID LVTGPSEASPVNDNVDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFFASRKIHKGAG QDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADKSFLGTSTTEQNSAEH ADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQHERVQHELPEVTPKGC QTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQDGSDTD YSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIE(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |