Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0262300_circ_g.9 |
ID in PlantcircBase | osa_circ_018984 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 8590449-8595018 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0262300 |
Parent gene annotation |
Hypothetical conserved gene. (Os03t0262300-01) |
Parent gene strand | - |
Alternative splicing | Os03g0262300_circ_g.3 Os03g0262300_circ_g.4 Os03g0262300_circ_g.5 Os03g0262300_circ_g.6 Os03g0262300_circ_g.7 Os03g0262300_circ_g.8 Os03g0262300_circ_g.10 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0262300-01:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.096814415 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8594686-8590459(+) 8593347-8590451(-) |
Potential amino acid sequence |
MLCSAFGSEPSVLHPDSYPCLSSVFSEGFHQPKSLHPYYLAPDQLSLCLKTAQLH*(+) MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQH ERVQHELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTN GSMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEPSSNRETTGL EQDSKDEVILVDESPQKKQRKGRGKNQGAALKVPNRKHCKALESTDGHESCQQLRSSQTQAVLP QKSPTSVDIDLVTGPSEASPVNDNVDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFF ASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADKSFLGT STTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQHERVQH ELPEVTPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNG RSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEPSSNRETTGLEQDSK DEVILVDESPQKKQRKGRGKNQGAALKVPNRKHCKALESTDGHESCQQLRSSQTQAVLPQKSPT SVDIDLVTGPSEASPVNDNVDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFFASRKI HKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADKSFLGTSTTEQ NSAEHADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQHERVQHELPEV TPKGCQTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQD GSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEPSSNRETTGLEQDSKDEVIL VDESPQKKQRKGRGKNQGAALKVPNRKHCKALESTDGHESCQQLRSSQTQAVLPQKSPTSVDID LVTGPSEASPVNDNVDALDNEDKPQLIVDLRSEANIAAEENRRLSSGKKMHPFFASRKIHKGAG QDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADKSFLGTSTTEQNSAEH ADPGKHLANFHDKQNKSKFSSQDVIDVDDECLLASSSCFHASLFESKQHERVQHELPEVTPKGC QTANLWTDKYRPETAAQVCGNSKHVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQDGSDTD YSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |