Detail information of AT1G03780_circ_g.2


General Information
CircRNA Name AT1G03780_circ_g.2
ID in PlantcircBase ath_circ_000457
Alias NA
Organism Arabidpsis thaliana
Position chr1: 948088-948816  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G03780
Parent gene annotation Protein TPX2
Parent gene strand -
Alternative splicing AT1G03780_circ_g.1 AT1G03780_circ_g.3 AT1G03780_circ_g.4 AT1G03780_circ_g.5 AT1G03780_circ_g.6 AT1G03780_circ_g.7 AT1G03780_circ_g.8 AT1G03780_circ_g.9 AT1G03780_circ_g.10 AT1G03780_circ_g.11 AT1G03780_circ_g.12 AT1G03780_circ_g.13 AT1G03780_circ_g.14 AT1G03780_circ_g.15 AT1G03780_circ_g.16 AT1G03780_circ_g.17 AT1G03780_circ_g.18 AT1G03780_circ_g.19 AT1G03780_circ_g.20 AT1G03780_circ_g.21 AT1G03780_circ_g.22 AT1G03780_circ_g.23 AT1G03780_circ_g.24 AT1G03780_circ_g.25 AT1G03780_circ_g.26 AT1G03780_circ_g.27 AT1G03780_circ_g.28 AT1G03780_circ_g.29 AT1G03780_circ_g.30 AT1G03780_circ_g.31 AT1G03780_circ_g.32 AT1G03780_circ_g.33 AT1G03780_circ_g.34
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G03780.2:4
AT1G03780.1:3
AT1G03780.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGATATGGATTTGCCTTTGGAACTCTTGCCTTTACATCTCCTAATTTCTTATACATGAGTTC
CATATAAAATTTCTTCTCTTTCTCAGCGCCTCTTTCcatttttgcagcttcactctcttcacgg
tatcttttgtactggttctccttctctttgatctggttccaaaatagaatggattcatcaattt
cagaggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTTTGCAGCTTCACTCTCTTCACGGTATCTTTTGTACTGGTTCTCCTTCTCTTTGATCTGG
TTCCAAAATAGAATGGATTCATCAATTTCAGAGGTTATTGAAGCATTCTTTTGTTTGCTGAAAT
GACTGAAAAGAATGCTTACTTTGTGATCAAAATCTGCTCGTTCAACAGCTCGATGCTCTACATG
AAGATTGAACTCCTGAATTTCTGTGAGGGGCATTCGTACTTTCTCTGGAACAGGGATTGGGTCC
CTGTGATCAAAGCCATTGTGAGCATTTTGAAAACGTTGATAAAGATTCGGGAGATAAACAAATA
GTAAAAGGGAAGGTCACTTACTCTTTTATAACTGGTTGTGCTTTGAAGAGCCTCTTCTGGGCTT
CTTCTGTCTCCATTCTCCTCCTCTCTTCCCTTTCTCTTCGCATTTCCTCTTCGTGCCTTACTAG
ACTCTCTAACTGGAACGGTTCTGGTTGTGTGCATTGCTTAGGTTCTGGTTTTGGTGGTACCTGA
GAGTTGGAACACGTAAGATTTATCAACACCATCTCTCTCTTCTGCAACACAAAAACAAAACCAA
GGAAGGAAAATAAGAAGTTTAGGATGTACATACCACTGGATAGTCCGTCGTGTAAGGATATGGA
TTTGCCTTTGGAACTCTTGCCTTTACATCTCCTAATTTCTTATACATGAGTTCCATATAAAATT
TCTTCTCTTTCTCAGCGCCTCTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.186087723
Functional Information
Coding potential Y
Potential coding position 948784-948090(-)
Potential amino acid sequence MELMYKKLGDVKARVPKANPYPYTTDYPVVPPKPEPKQCTQPEPFQLESLVRHEEEMRREREER
RRMETEEAQKRLFKAQPVIKEDPIPVPEKVRMPLTEIQEFNLHVEHRAVERADFDHKIKEKENQ
YKRYREESEAAKMERGAEKEKKFYMELMYKKLGDVKARVPKANPYPYTTDYPVVPPKPEPKQCT
QPEPFQLESLVRHEEEMRREREERRRMETEEAQKRLFKAQPVIKEDPIPVPEKVRMPLTEIQEF
NLHVEHRAVERADFDHKIKEKENQYKRYREESEAAKMERGAEKEKKFYMELMYKKLGDVKARVP
KANPYPYTTDYPVVPPKPEPKQCTQPEPFQLESLVRHEEEMRREREERRRMETEEAQKRLFKAQ
PVIKEDPIPVPEKVRMPLTEIQEFNLHVEHRAVERADFDHKIKEKENQYKRYREESEAAKMERG
AEKEKKFYMELMYKKLGDVKARVPKANPYPYTTDYPVVPPKPEPKQCTQPEPFQLESLVRHEEE
MRREREERRRMETEEAQKRLFKAQPVIKEDPIPVPEKVRMPLTEIQEFNLHVEHRAVERADFDH
KIKEKENQYKRYREESEAAKM(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017