Plant Circular RNA Database

Detail information of Os11g0266800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os11g0266800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_009036
					
						Alias
						Os_ciR7283
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 9158170-9160667  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os11g0266800						
					
						Parent gene annotation
						
							Tetratricopeptide-like helical domain containing protein. (Os11t
0266800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os11g0266800_circ_g.2 Os11g0266800_circ_g.3 Os11g0266800_circ_g.4 Os11g0266800_circ_g.5 Os11g0266800_circ_g.6 Os11g0266800_circ_g.7 Os11g0266800_circ_g.8 Os11g0266800_circ_g.9 						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0266800-01:4

General Information
CircRNA Name	Os11g0266800_circ_g.1
ID in PlantcircBase	osa_circ_009036
Alias	Os_ciR7283
Organism	Oryza sativa
Position	chr11: 9158170-9160667 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os11g0266800
Parent gene annotation	Tetratricopeptide-like helical domain containing protein. (Os11t 0266800-01)
Parent gene strand	-
Alternative splicing	Os11g0266800_circ_g.2 Os11g0266800_circ_g.3 Os11g0266800_circ_g.4 Os11g0266800_circ_g.5 Os11g0266800_circ_g.6 Os11g0266800_circ_g.7 Os11g0266800_circ_g.8 Os11g0266800_circ_g.9
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0266800-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTTCTCATCAGCGAGAGTATCATTTCCAAGTTTAAGAGTACGGTTGATAACTTGTAGAGCCTC
CCAGTATCGGTGAAGCAAAGCTAATGTTTGGCAAAGctggctgttgtcacaaagacgcagatat
cgaaagaggaatgccaaagcttgaacgatgcactggttcttattctgaagcctaaagccaaggg
ctaaatta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 546
Transcript exons: 9158170-9158282,9158372-9158562,9159366-9159480,9160541-
9160667
CTGGCTGTTGTCACAAAGACGCAGATATCGAAAGAGGAATGCCAAAGCTTGAACGATGCACTGG
TTCTTATTCTGAAGCCTAAAGCCAAGGGCTAAATTAATTAGAGCAGATCCAACACAGAGATTTA
TAAATGGATTTTCTGGGTTCAATTTATAAGCTTCCAGATAATCACGAGCAGCTGACTGATGCTG
GCTGATAGCCGTAAATCGATGGCCAGATATGATTATAGGAGGCACACAGTCAGTCTTTTCTTCT
CTTGTCCGTAGAAGAAATTTATGATGACGTGAGAACCTATCTTCTATTCTTGATGTCACCTTGT
AGTATGAGTTCCATGCAGCAAGGGAATATGGATGCTGCTGAACTACATAGCGGACATAATTAAA
GCCATGTCTAGGGTCTGGAGCTCTATAAGCTATTTGAGCACCCAAGGATCTGAGCTCCTCTTTG
TTCTCATCAGCGAGAGTATCATTTCCAAGTTTAAGAGTACGGTTGATAACTTGTAGAGCCTCCC
AGTATCGGTGAAGCAAAGCTAATGTTTGGCAAAG
						
					

						Genomic sequence
						
							CTGGCTGTTGTCACAAAGACGCAGATATCGAAAGAGGAATGCCAAAGCTTGAACGATGCACTGG
TTCTTATTCTGAAGCCTAAAGCCAAGGGCTAAATTAATTAGAGCAGATCCTGCAAATGATTGAA
CAGCTACAGTTAGTACTCTTATATGTTGATACGTGTTAATGTTAATACTTAATGCCATTGTTTT
GGTGGCATACCAACACAGAGATTTATAAATGGATTTTCTGGGTTCAATTTATAAGCTTCCAGAT
AATCACGAGCAGCTGACTGATGCTGGCTGATAGCCGTAAATCGATGGCCAGATATGATTATAGG
AGGCACACAGTCAGTCTTTTCTTCTCTTGTCCGTAGAAGAAATTTATGATGACGTGAGAACCTA
TCTTCTATTCTGCAAAGAAAATGTGAAATTAGAACAAGTGAACAGCTGCTTTTGATTTCAAAAT
TTTCATGGTGCAACTCGATATATACAGACTATATTGTTTGAGTATTATCAGAGAGTAGTACAAC
GGAAACTGGAAACTGAGGAGCCTAGCAGGGCAAGAGCAATGTCATACAACACCAGAAGGGCTAT
TGGGGAAGTCCTAGTGGATATTGCATATAAAAAAAATAAAAATGTGTTGAACAAAAGCATGTTC
TAACGAAAGTGGAGATTAAAGCACTACCTGTTTTTTTTTTGAAAGCAGGGATTGGAAAACTAGG
ACTGACCAACAATCAGCATTTTAACAAGCCAGGTGAGAGGTTTCAAATTCGGAGTTGATTAGGA
TTCAACTGAATATGCTAGGTATACCATTTTCAAATACTCTGTCAAAACATGAAGAATTGACAAC
ACAACTCAGCCCTTTTTCATGGTGTTTATGCCAAAAAGTGCAAAAAGGCAAAAACCAATCAGCC
AGCTCTAGGATACCTTCACCCAATTCACAGCTGGGTTTTGTGGCTACATAAGATTGTTCAACAC
TGTTTATCGCTATAATCTAACTGAAACGAAATTACTAATGCTGGCAAAAAAAAAAGTAAAAGGT
CTTTCAACCGGACAAAAAGGAACCAAAGGCCTATGCCCCACAAATTGTATACAACATGCAAAAT
ACAGAACATATGTAGTGTGACCAGTATAAATAAATGCAAAAAAAAATCAATCATAATCATTCCA
ACTAATAAATGCAAAAATTCAATCATAATCATTCCAACTATTACCTTGATGTCACCTTGTAGTA
TGAGTTCCATGCAGCAAGGGAATATGGATGCTGCTGAACTACATAGCGGACATAATTAAAGCCA
TGTCTAGGGTCTGGAGCTCTATAAGCTATTTCTGCAAAATTGCAAGAACAATAATATCAAGTCA
AACGAACTGTCATAAATATTACCAAATAACCTGTCTCGATTTTCATAATATAATAAGAAATCGA
TGAAGTGTCAGTGCGTGCTACTCAATCACTCATTAAGAGTGTCAACAAAATGACACTAATATAG
TTGCAATTGGCAACCAGATTCACTCATACAATATCACCCTGGTCTCATTCTTTACCATTTCCTG
CCCCAGCAGCACCTCTCCATTGGGCCTACCCGCCACTCCTAGGTACAGCCAGAACATAGCACTT
ACGGCAGAAGGCATGGGAATTCCAATGTGGAGAACTTCAAGACCAGCTCTGTGTCCCACATCAG
TTAACTTTTATTATGAGGTGTGAGGTCATTCTGATGGTTGCAAATCACATAATTGAATGGAAGT
TCCTAGTTGCAATAGTTGCTTGTTTGGTTTTCCCACACTGCCAAATTCTATATGTTTTTCTCTA
GCTGTTTGGTTAATTGCCACAATTCTGACGTGATAGTCTTTTTGCCCTAGAGCCCCCTTTCATA
CACCTGTATGCCTAAGGTGTGGCCAGCAATTAGTTTTATTTACCAAACCTTTTTTTTAGAACAT
GCAGGAGATCTGCGATTAACCAAACCTTTGACAACATGTGAAAGGGAAAAAAAATTAGGAAGGT
TCAAACCCATCACTTCTTGACATCCGTATGGATGGATGGTGAGCTTACATCAACTGGGCTACTG
CACTTAGATGATTAGAAAGGGAGTTAACTTTTTTCAGAACAGAGCAAAGGATTTGATTCTTTTA
CTGGACCTTTATCTGGGTGAGCCAATCTGTCACATTTCCCAGACTGAAGCAAACCATGTTAATA
GACAGTTTGGCCCAATCTGACCAGTGGAAAGGATGATCATCACATGGGGAAAAAAGAGGTTAAT
CATTTGAAATGAGAATAATGGAAATGTTGGATCAAAAACTGAAATCTATAGTATGTCGTCAGTT
ACAATGAACTAACTGCATGTAGCATTTTATCAATTGAATAATACATAGAGCTGGGAATAGATCT
TACGAGCACCCAAGGATCTGAGCTCCTCTTTGTTCTCATCAGCGAGAGTATCATTTCCAAGTTT
AAGAGTACGGTTGATAACTTGTAGAGCCTCCCAGTATCGGTGAAGCAAAGCTAATGTTTGGCAA
AG
						
					

			
		

Sequences
Splice junction sequence	TGTTCTCATCAGCGAGAGTATCATTTCCAAGTTTAAGAGTACGGTTGATAACTTGTAGAGCCTC CCAGTATCGGTGAAGCAAAGCTAATGTTTGGCAAAGctggctgttgtcacaaagacgcagatat cgaaagaggaatgccaaagcttgaacgatgcactggttcttattctgaagcctaaagccaaggg ctaaatta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 546 Transcript exons: 9158170-9158282,9158372-9158562,9159366-9159480,9160541- 9160667 CTGGCTGTTGTCACAAAGACGCAGATATCGAAAGAGGAATGCCAAAGCTTGAACGATGCACTGG TTCTTATTCTGAAGCCTAAAGCCAAGGGCTAAATTAATTAGAGCAGATCCAACACAGAGATTTA TAAATGGATTTTCTGGGTTCAATTTATAAGCTTCCAGATAATCACGAGCAGCTGACTGATGCTG GCTGATAGCCGTAAATCGATGGCCAGATATGATTATAGGAGGCACACAGTCAGTCTTTTCTTCT CTTGTCCGTAGAAGAAATTTATGATGACGTGAGAACCTATCTTCTATTCTTGATGTCACCTTGT AGTATGAGTTCCATGCAGCAAGGGAATATGGATGCTGCTGAACTACATAGCGGACATAATTAAA GCCATGTCTAGGGTCTGGAGCTCTATAAGCTATTTGAGCACCCAAGGATCTGAGCTCCTCTTTG TTCTCATCAGCGAGAGTATCATTTCCAAGTTTAAGAGTACGGTTGATAACTTGTAGAGCCTCCC AGTATCGGTGAAGCAAAGCTAATGTTTGGCAAAG
Genomic sequence	CTGGCTGTTGTCACAAAGACGCAGATATCGAAAGAGGAATGCCAAAGCTTGAACGATGCACTGG TTCTTATTCTGAAGCCTAAAGCCAAGGGCTAAATTAATTAGAGCAGATCCTGCAAATGATTGAA CAGCTACAGTTAGTACTCTTATATGTTGATACGTGTTAATGTTAATACTTAATGCCATTGTTTT GGTGGCATACCAACACAGAGATTTATAAATGGATTTTCTGGGTTCAATTTATAAGCTTCCAGAT AATCACGAGCAGCTGACTGATGCTGGCTGATAGCCGTAAATCGATGGCCAGATATGATTATAGG AGGCACACAGTCAGTCTTTTCTTCTCTTGTCCGTAGAAGAAATTTATGATGACGTGAGAACCTA TCTTCTATTCTGCAAAGAAAATGTGAAATTAGAACAAGTGAACAGCTGCTTTTGATTTCAAAAT TTTCATGGTGCAACTCGATATATACAGACTATATTGTTTGAGTATTATCAGAGAGTAGTACAAC GGAAACTGGAAACTGAGGAGCCTAGCAGGGCAAGAGCAATGTCATACAACACCAGAAGGGCTAT TGGGGAAGTCCTAGTGGATATTGCATATAAAAAAAATAAAAATGTGTTGAACAAAAGCATGTTC TAACGAAAGTGGAGATTAAAGCACTACCTGTTTTTTTTTTGAAAGCAGGGATTGGAAAACTAGG ACTGACCAACAATCAGCATTTTAACAAGCCAGGTGAGAGGTTTCAAATTCGGAGTTGATTAGGA TTCAACTGAATATGCTAGGTATACCATTTTCAAATACTCTGTCAAAACATGAAGAATTGACAAC ACAACTCAGCCCTTTTTCATGGTGTTTATGCCAAAAAGTGCAAAAAGGCAAAAACCAATCAGCC AGCTCTAGGATACCTTCACCCAATTCACAGCTGGGTTTTGTGGCTACATAAGATTGTTCAACAC TGTTTATCGCTATAATCTAACTGAAACGAAATTACTAATGCTGGCAAAAAAAAAAGTAAAAGGT CTTTCAACCGGACAAAAAGGAACCAAAGGCCTATGCCCCACAAATTGTATACAACATGCAAAAT ACAGAACATATGTAGTGTGACCAGTATAAATAAATGCAAAAAAAAATCAATCATAATCATTCCA ACTAATAAATGCAAAAATTCAATCATAATCATTCCAACTATTACCTTGATGTCACCTTGTAGTA TGAGTTCCATGCAGCAAGGGAATATGGATGCTGCTGAACTACATAGCGGACATAATTAAAGCCA TGTCTAGGGTCTGGAGCTCTATAAGCTATTTCTGCAAAATTGCAAGAACAATAATATCAAGTCA AACGAACTGTCATAAATATTACCAAATAACCTGTCTCGATTTTCATAATATAATAAGAAATCGA TGAAGTGTCAGTGCGTGCTACTCAATCACTCATTAAGAGTGTCAACAAAATGACACTAATATAG TTGCAATTGGCAACCAGATTCACTCATACAATATCACCCTGGTCTCATTCTTTACCATTTCCTG CCCCAGCAGCACCTCTCCATTGGGCCTACCCGCCACTCCTAGGTACAGCCAGAACATAGCACTT ACGGCAGAAGGCATGGGAATTCCAATGTGGAGAACTTCAAGACCAGCTCTGTGTCCCACATCAG TTAACTTTTATTATGAGGTGTGAGGTCATTCTGATGGTTGCAAATCACATAATTGAATGGAAGT TCCTAGTTGCAATAGTTGCTTGTTTGGTTTTCCCACACTGCCAAATTCTATATGTTTTTCTCTA GCTGTTTGGTTAATTGCCACAATTCTGACGTGATAGTCTTTTTGCCCTAGAGCCCCCTTTCATA CACCTGTATGCCTAAGGTGTGGCCAGCAATTAGTTTTATTTACCAAACCTTTTTTTTAGAACAT GCAGGAGATCTGCGATTAACCAAACCTTTGACAACATGTGAAAGGGAAAAAAAATTAGGAAGGT TCAAACCCATCACTTCTTGACATCCGTATGGATGGATGGTGAGCTTACATCAACTGGGCTACTG CACTTAGATGATTAGAAAGGGAGTTAACTTTTTTCAGAACAGAGCAAAGGATTTGATTCTTTTA CTGGACCTTTATCTGGGTGAGCCAATCTGTCACATTTCCCAGACTGAAGCAAACCATGTTAATA GACAGTTTGGCCCAATCTGACCAGTGGAAAGGATGATCATCACATGGGGAAAAAAGAGGTTAAT CATTTGAAATGAGAATAATGGAAATGTTGGATCAAAAACTGAAATCTATAGTATGTCGTCAGTT ACAATGAACTAACTGCATGTAGCATTTTATCAATTGAATAATACATAGAGCTGGGAATAGATCT TACGAGCACCCAAGGATCTGAGCTCCTCTTTGTTCTCATCAGCGAGAGTATCATTTCCAAGTTT AAGAGTACGGTTGATAACTTGTAGAGCCTCCCAGTATCGGTGAAGCAAAGCTAATGTTTGGCAA AG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_009490 zma_circ_001641 						
					
						PMCS
						0.411633314

Conservation Information
Conserved circRNAs	osi_circ_009490 zma_circ_001641
PMCS	0.411633314

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							9160656-9158249(+)
						
						Potential amino acid sequence
						
							MFGKAGCCHKDADIERGMPKLERCTGSYSEA*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	9160656-9158249(+)
Potential amino acid sequence	MFGKAGCCHKDADIERGMPKLERCTGSYSEA*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os11g0266800_circ_g.1

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