Plant Circular RNA Database

Detail information of Os11g0266800_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os11g0266800_circ_g.8
					
						ID in PlantcircBase
						osa_circ_009043
					
						Alias
						Os11circ04216/Os_ciR628
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 9168273-9170120  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os11g0266800						
					
						Parent gene annotation
						
							Tetratricopeptide-like helical domain containing protein. (Os11t
0266800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os11g0266800_circ_g.1 Os11g0266800_circ_g.2 Os11g0266800_circ_g.3 Os11g0266800_circ_g.4 Os11g0266800_circ_g.5 Os11g0266800_circ_g.6 Os11g0266800_circ_g.7 Os11g0266800_circ_g.9 						
					
						Support reads
						11/43/5
					
						Tissues
						leaf and panicle/root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0266800-01:4

General Information
CircRNA Name	Os11g0266800_circ_g.8
ID in PlantcircBase	osa_circ_009043
Alias	Os11circ04216/Os_ciR628
Organism	Oryza sativa
Position	chr11: 9168273-9170120 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene	Os11g0266800
Parent gene annotation	Tetratricopeptide-like helical domain containing protein. (Os11t 0266800-01)
Parent gene strand	-
Alternative splicing	Os11g0266800_circ_g.1 Os11g0266800_circ_g.2 Os11g0266800_circ_g.3 Os11g0266800_circ_g.4 Os11g0266800_circ_g.5 Os11g0266800_circ_g.6 Os11g0266800_circ_g.7 Os11g0266800_circ_g.9
Support reads	11/43/5
Tissues	leaf and panicle/root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0266800-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGATGGTATGAATTTGACAAATTCGG
CGCGATCCGCACAACCTCATGTAATATAGGAATTGCatcattatgaacagcaacatcttcaatc
atcaggtaaaactttattgcatactcatattgtcctaaattttcgagagtgctagcaacctcct
tgatcaca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 180
Transcript exons: 9168273-9168391,9170060-9170120
ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGATGGTATG
AATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
Transcript length: 182
Transcript exons: 9168273-9168417,9170084-9170120
ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT
GCACATTCTGAAGAAACGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
Transcript length: 185
Transcript exons: 9168273-9168371,9170035-9170120
ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACCACTCTTTATAAATGCTACCAAGTAGATG
GTATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
Transcript length: 199
Transcript exons: 9168273-9168291,9169941-9170120
ATCATTATGAACAGCAACATGCCATGTCAATGAGTTTCTTCCACAAAAATACATCCTTTGGAGA
AACATATGCAGCGAGCATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTTTATAAATG
CTACCAAGTAGATGGTATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAG
GAATTGC
Transcript length: 235
Transcript exons: 9168273-9168355,9169949-9170049,9170070-9170120
ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAATGAGTTTCTTCCACAAAAATACATCCTTTGGAGAAACATATG
CAGCGAGCATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTTTATAAATGATTTGACA
AATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
Transcript length: 251
Transcript exons: 9168273-9168354,9169952-9170120
ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTATGAGTTTCTTCCACAAAAATACATCCTTTGGAGAAACATATGCAGC
GAGCATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGA
TGGTATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
Transcript length: 364
Transcript exons: 9168273-9168384,9168776-9168923,9170017-9170120
ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTCTCAATGCTTCATTAT
AGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGATGTTTGTAGT
TTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAGTCCCTGTAC
ATCTGCTTTATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGATGGTATGAATTTGAC
AAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
Transcript length: 373
Transcript exons: 9168273-9168413,9168796-9168923,9170017-9170120
ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT
GCACATTCTGAAGATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGAT
GTTTGTAGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAG
TCCCTGTACATCTGCTTTATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGATGGTAT
GAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
Transcript length: 783
Transcript exons: 9168273-9168419,9168664-9168921,9169417-9169612,9169939-
9170120
ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT
GCACATTCTGAAGAAACACCTCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGC
TTTTGCCTGCAATTGTACTGGCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTCTCAATC
AGCCTCAATGCTTCATTATAGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGAT
TCGAGTCGATGTTTGTAGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAAT
TTGACCACAGTCCCTGTACATCTGTGCTGCTGCTTTACGAGCAACAATGTTTGAAGGATAAATT
CTGACTATCTGCTCGTATATCTCTCCAGCTTTCTGATAGTCATGCAAAGCGCGATATATATTAG
CACAATCAAACTTCAGTCCTACATCTTCAGGATCTGCTCTCATCGCTTTTAAAACACAGTGTCT
TGCTAAAGCAGCATCTTCCTTTTTCAATGCCATGTCAATGAGTTTCTTCCACAAAAATACATCC
TTTGGAGAAACATATGCAGCGAGCATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTT
TATAAATGCTACCAAGTAGATGGTATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATG
TAATATAGGAATTGC
						
					

						Genomic sequence
						
							ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT
GCACATTCTGAAGAAACACCTGCACAAGTAATACCAATTCAATAACTAAGAAACTCAAAACTAT
ACGTTGAAGTAGTCTTGGATACAGTATATACACAAGCACAATCTAATCTTGCAGAGTACAACCT
GTTATCAGAGCAATTTATAGTCATATCGAGGATTTATAGTGTCTAATAAACCAATGGTAGCAAA
AGGTGGGTTTTGACTAATCAAGGATAAATTATGTCAAGTGTGTGCTATAATGGAACAGAACTGG
GACAAACCTCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGCTTTTGCCTGCAA
TTGTACTGGCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTCTCAATCAGCCTCAATGCT
TCATTATAGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGATGT
TTGTAGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAGTC
CCTGTACATCTGGACAAAAAAGTCACAAAGCAATAAGTGGAAGTCTAGAACTAACTCAGCAGTC
CATATTGTTATGTACTGGCTTCAGTGATTAGATAGCAGTTCAGATATATGAGTTCTTAGTTGTG
TCATGTGCATCCAGGTGTCTAGAGTCAAGTCTTAGCAGTTGGCATCCAGGAGTCCAAGAGTCTA
TAGAAGTTAAGAGCCCTCATACTTGCTTGTGCCTTAAGCTAAATAGAGATAAGTGTCCTGTTTG
GATGGTGCTAATTGGTCTTGTTTACATGCATGTCTAGGGACCTATATGTTTGTATTCATTGACT
CAAATAGAGGCATGAAAGATCATTATATCTGTATCTCCCTCTTGTCCCTGACTACAATGGTTCC
CTGCCGCTGGCTACCAGGAAGAACCTCATTCACCAACGCTACTAGCCCATAAAAGCTAAAATCA
ATTTGTAATTTATATGCACCACAAAATAACGCAAGAATTGTTATAAGCAAATAAACCTGTGCTG
CTGCTTTACGAGCAACAATGTTTGAAGGATAAATTCTGACTATCTGCTCGTATATCTCTCCAGC
TTTCTGATAGTCATGCAAAGCGCGATATATATTAGCACAATCAAACTTCAGTCCTACATCTTCA
GGATCTGCTCTCATCGCTTTTAAAACACAGTGTCTTGCTAAAGCAGCATCTTCCTTTTTCCTGA
CAAATATAATAAAGTAGTCAATATGGTCCGTTATATTATTATTTCTGGCCATTGTATGCCTTAC
CTCCAAGAAAAAATTATGCTAGGTAATCAGCAATTAAGGTACTTTGGGTTCATGTATTAACAAG
AACTAGAGGCTTCCTGAAAATTAGTATCATAAAACATAAAAGCAAAATTGAGGTCTGAGGATGA
GACCATATTACTGAATGCAACATTTGTACTCTGCATAAATCAAGCTAACTACTGTAACAAATTA
AAAGTTTATGAATAGAATTAAAAAAATGAAACATAGAAAAAGGAAAAAGGATTAGCATTAACTC
ACAATGCCATGTCAATGAGTTTCTTCCACAAAAATACATCCTTTGGAGAAACATATGCAGCGAG
CATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGATGG
TATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
						
					

			
		

Sequences
Splice junction sequence	TATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGATGGTATGAATTTGACAAATTCGG CGCGATCCGCACAACCTCATGTAATATAGGAATTGCatcattatgaacagcaacatcttcaatc atcaggtaaaactttattgcatactcatattgtcctaaattttcgagagtgctagcaacctcct tgatcaca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 180 Transcript exons: 9168273-9168391,9170060-9170120 ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGATGGTATG AATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC Transcript length: 182 Transcript exons: 9168273-9168417,9170084-9170120 ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT GCACATTCTGAAGAAACGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC Transcript length: 185 Transcript exons: 9168273-9168371,9170035-9170120 ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACCACTCTTTATAAATGCTACCAAGTAGATG GTATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC Transcript length: 199 Transcript exons: 9168273-9168291,9169941-9170120 ATCATTATGAACAGCAACATGCCATGTCAATGAGTTTCTTCCACAAAAATACATCCTTTGGAGA AACATATGCAGCGAGCATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTTTATAAATG CTACCAAGTAGATGGTATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAG GAATTGC Transcript length: 235 Transcript exons: 9168273-9168355,9169949-9170049,9170070-9170120 ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT AAATTTTCGAGAGTGCTAGCAATGAGTTTCTTCCACAAAAATACATCCTTTGGAGAAACATATG CAGCGAGCATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTTTATAAATGATTTGACA AATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC Transcript length: 251 Transcript exons: 9168273-9168354,9169952-9170120 ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT AAATTTTCGAGAGTGCTATGAGTTTCTTCCACAAAAATACATCCTTTGGAGAAACATATGCAGC GAGCATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGA TGGTATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC Transcript length: 364 Transcript exons: 9168273-9168384,9168776-9168923,9170017-9170120 ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTCTCAATGCTTCATTAT AGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGATGTTTGTAGT TTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAGTCCCTGTAC ATCTGCTTTATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGATGGTATGAATTTGAC AAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC Transcript length: 373 Transcript exons: 9168273-9168413,9168796-9168923,9170017-9170120 ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT GCACATTCTGAAGATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGAT GTTTGTAGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAG TCCCTGTACATCTGCTTTATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGATGGTAT GAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC Transcript length: 783 Transcript exons: 9168273-9168419,9168664-9168921,9169417-9169612,9169939- 9170120 ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT GCACATTCTGAAGAAACACCTCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGC TTTTGCCTGCAATTGTACTGGCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTCTCAATC AGCCTCAATGCTTCATTATAGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGAT TCGAGTCGATGTTTGTAGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAAT TTGACCACAGTCCCTGTACATCTGTGCTGCTGCTTTACGAGCAACAATGTTTGAAGGATAAATT CTGACTATCTGCTCGTATATCTCTCCAGCTTTCTGATAGTCATGCAAAGCGCGATATATATTAG CACAATCAAACTTCAGTCCTACATCTTCAGGATCTGCTCTCATCGCTTTTAAAACACAGTGTCT TGCTAAAGCAGCATCTTCCTTTTTCAATGCCATGTCAATGAGTTTCTTCCACAAAAATACATCC TTTGGAGAAACATATGCAGCGAGCATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTT TATAAATGCTACCAAGTAGATGGTATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATG TAATATAGGAATTGC
Genomic sequence	ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT GCACATTCTGAAGAAACACCTGCACAAGTAATACCAATTCAATAACTAAGAAACTCAAAACTAT ACGTTGAAGTAGTCTTGGATACAGTATATACACAAGCACAATCTAATCTTGCAGAGTACAACCT GTTATCAGAGCAATTTATAGTCATATCGAGGATTTATAGTGTCTAATAAACCAATGGTAGCAAA AGGTGGGTTTTGACTAATCAAGGATAAATTATGTCAAGTGTGTGCTATAATGGAACAGAACTGG GACAAACCTCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGCTTTTGCCTGCAA TTGTACTGGCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTCTCAATCAGCCTCAATGCT TCATTATAGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGATGT TTGTAGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAGTC CCTGTACATCTGGACAAAAAAGTCACAAAGCAATAAGTGGAAGTCTAGAACTAACTCAGCAGTC CATATTGTTATGTACTGGCTTCAGTGATTAGATAGCAGTTCAGATATATGAGTTCTTAGTTGTG TCATGTGCATCCAGGTGTCTAGAGTCAAGTCTTAGCAGTTGGCATCCAGGAGTCCAAGAGTCTA TAGAAGTTAAGAGCCCTCATACTTGCTTGTGCCTTAAGCTAAATAGAGATAAGTGTCCTGTTTG GATGGTGCTAATTGGTCTTGTTTACATGCATGTCTAGGGACCTATATGTTTGTATTCATTGACT CAAATAGAGGCATGAAAGATCATTATATCTGTATCTCCCTCTTGTCCCTGACTACAATGGTTCC CTGCCGCTGGCTACCAGGAAGAACCTCATTCACCAACGCTACTAGCCCATAAAAGCTAAAATCA ATTTGTAATTTATATGCACCACAAAATAACGCAAGAATTGTTATAAGCAAATAAACCTGTGCTG CTGCTTTACGAGCAACAATGTTTGAAGGATAAATTCTGACTATCTGCTCGTATATCTCTCCAGC TTTCTGATAGTCATGCAAAGCGCGATATATATTAGCACAATCAAACTTCAGTCCTACATCTTCA GGATCTGCTCTCATCGCTTTTAAAACACAGTGTCTTGCTAAAGCAGCATCTTCCTTTTTCCTGA CAAATATAATAAAGTAGTCAATATGGTCCGTTATATTATTATTTCTGGCCATTGTATGCCTTAC CTCCAAGAAAAAATTATGCTAGGTAATCAGCAATTAAGGTACTTTGGGTTCATGTATTAACAAG AACTAGAGGCTTCCTGAAAATTAGTATCATAAAACATAAAAGCAAAATTGAGGTCTGAGGATGA GACCATATTACTGAATGCAACATTTGTACTCTGCATAAATCAAGCTAACTACTGTAACAAATTA AAAGTTTATGAATAGAATTAAAAAAATGAAACATAGAAAAAGGAAAAAGGATTAGCATTAACTC ACAATGCCATGTCAATGAGTTTCTTCCACAAAAATACATCCTTTGGAGAAACATATGCAGCGAG CATTAGAAAGTTTATGGCTTTATCTAGTTCACCGCACTCTTTATAAATGCTACCAAGTAGATGG TATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003107* osi_circ_009496 						
					
						PMCS
						0.3946438

Conservation Information
Conserved circRNAs	osi_circ_003107* osi_circ_009496
PMCS	0.3946438

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							9170048-9168279(+)
9170005-9168275(-)
9168294-9170026(-)
						
						Potential amino acid sequence
						
							MLPSRWYEFDKFGAIRTTSCNIGIASL*(+)
MLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKFDCANIYRALHDYQKA
GEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRN
NAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIK
EVASTLENLGQYEYAIKFYLMIEDVAVHNDAIPILHEVVRIAPNLSNSYHLLGSIYKECGELDK
AINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKFDCANIYRALH
DYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLIS
LYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDN
TDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHNDAIPILHEVVRIAPNLSNSYHLLGSIYKEC
GELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKFDCANI
YRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHL
DLLISLYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLE
RSKDNTDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHNDAIPILHEVVRIAPNLSNSYHLLGS
IYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKF
DCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNI
DSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQ
NVHLERSKDNTDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHND(-)
MLLFIMMQFLYYMRLCGSRRICQIHTIYLVAFIKSAVN*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	9170048-9168279(+) 9170005-9168275(-) 9168294-9170026(-)
Potential amino acid sequence	MLPSRWYEFDKFGAIRTTSCNIGIASL(+) MLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKFDCANIYRALHDYQKA GEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRN NAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIK EVASTLENLGQYEYAIKFYLMIEDVAVHNDAIPILHEVVRIAPNLSNSYHLLGSIYKECGELDK AINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKFDCANIYRALH DYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLIS LYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDN TDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHNDAIPILHEVVRIAPNLSNSYHLLGSIYKEC GELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKFDCANI YRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHL DLLISLYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLE RSKDNTDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHNDAIPILHEVVRIAPNLSNSYHLLGS IYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKF DCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNI DSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQ NVHLERSKDNTDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHND(-) MLLFIMMQFLYYMRLCGSRRICQIHTIYLVAFIKSAVN(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os11g0266800_circ_g.8

Address

Any questions?

Supported by