Detail information of Os11g0266800_circ_g.6


General Information
CircRNA Name Os11g0266800_circ_g.6
ID in PlantcircBase osa_circ_009041
Alias NA
Organism Oryza sativa
Position chr11: 9167032-9168272  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0266800
Parent gene annotation Tetratricopeptide-like helical domain containing protein. (Os11t
0266800-01)
Parent gene strand -
Alternative splicing Os11g0266800_circ_g.1 Os11g0266800_circ_g.2 Os11g0266800_circ_g.3 Os11g0266800_circ_g.4 Os11g0266800_circ_g.5 Os11g0266800_circ_g.7 Os11g0266800_circ_g.8 Os11g0266800_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCATATGGTCCTAATTATCATTTGTTCCATGCTTAATTGAACGCTAGAAACATGTAATAGTGA
AACAGAACTTCAAAATGAAGCAAATCGGCTACTTACtatcaaactagagaagggtgaaggaaat
aaaatatacatacaacttcctcaatcccttaatggactaggtgattgcgatggtgtgctttaca
cccatcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1241
Transcript exons: 9167032-9168272
TATCAAACTAGAGAAGGGTGAAGGAAATAAAATATACATACAACTTCCTCAATCCCTTAATGGA
CTAGGTGATTGCGATGGTGTGCTTTACACCCATCCTTTCATTTCCAAAATATCATTTATTGATG
GATTTCTGTAGGCATGTATTTATAGAATCTTTTATGAAGGATTGCATCCTTTGTACATGTGTAA
GCAAGTGACTAGTTGATCCATTGTGAATTAGAATGTTTTCTGTAGATTTTTAAATACCTTTTTT
TTATGAAGCATTAAAGCAGACAAAGCCCATTCCCCATTCCTGATCATGGTACCATTATCAAGCC
TTCTAAAGAGCATGTACATTCTAATCAAATTTGGAACATTTGTGGCTAGCTAGAAGATCTACAT
GCTGTTAAAAGCACATTCTCAAATGATTAATTGATTTTTTTATCATATTTATGTTCAAATCAGC
TAATAGGAACTGCTTTGCCCCCAACTTCTTTCAGTAGCAGTTGCCTGGCTTCACCTCTTCTGGG
TTACGTAGTTACATAATTTTATTCCACTATAACTCACGACTAATGGATAGGTTCAAATTTATTA
TGTTGAGATGGGCTTCCTTCCCCTTCCAAAAATTATACTCATTGGAATCAAACCAGATGTTTGT
TTCCAATTACCAAGTCTATCATAATCGTATTATGCACTTATAGCATTACCTTGATAAGTTATAT
ATGTCAAAAGATTCACAGGATTGAATTGATCTTCTGAAGACTTCACAGCATTTAGGAAAAAGTT
CGCTTAACACTTTGTGGTTAGTCAATGTGGACAATGACGTGGTGGGTGGTGTTGCTTGCATGAC
ACACACACCAAAGCATGTTTCACCCAAGTTTGCCCAAGCAATCACTTTCTTTAGTCAGCAAGCC
CAGAAACCACCTCCAGTGCTATTTGTACTTCTTCTCCAAGCTATTCTGCTAGTTAAAAAATATT
TAACTGAATCCATCACCATGTCACTGTTCTCGTCATCGTCCACATGGGGAAAACACTTACAATA
CAACTCCAGGGGGGAGGGGGGGTTTCAAATAGTTGTTCATGCGTTGGGGAGTAGAATATCAGGT
TTTGTACTTCAGGGGGTTAAGTAGAGGTTTTGGCTTTTTGCCATTATTTATAAATCATATGGTC
CTAATTATCATTTGTTCCATGCTTAATTGAACGCTAGAAACATGTAATAGTGAAACAGAACTTC
AAAATGAAGCAAATCGGCTACTTAC

Genomic sequence TATCAAACTAGAGAAGGGTGAAGGAAATAAAATATACATACAACTTCCTCAATCCCTTAATGGA
CTAGGTGATTGCGATGGTGTGCTTTACACCCATCCTTTCATTTCCAAAATATCATTTATTGATG
GATTTCTGTAGGCATGTATTTATAGAATCTTTTATGAAGGATTGCATCCTTTGTACATGTGTAA
GCAAGTGACTAGTTGATCCATTGTGAATTAGAATGTTTTCTGTAGATTTTTAAATACCTTTTTT
TTATGAAGCATTAAAGCAGACAAAGCCCATTCCCCATTCCTGATCATGGTACCATTATCAAGCC
TTCTAAAGAGCATGTACATTCTAATCAAATTTGGAACATTTGTGGCTAGCTAGAAGATCTACAT
GCTGTTAAAAGCACATTCTCAAATGATTAATTGATTTTTTTATCATATTTATGTTCAAATCAGC
TAATAGGAACTGCTTTGCCCCCAACTTCTTTCAGTAGCAGTTGCCTGGCTTCACCTCTTCTGGG
TTACGTAGTTACATAATTTTATTCCACTATAACTCACGACTAATGGATAGGTTCAAATTTATTA
TGTTGAGATGGGCTTCCTTCCCCTTCCAAAAATTATACTCATTGGAATCAAACCAGATGTTTGT
TTCCAATTACCAAGTCTATCATAATCGTATTATGCACTTATAGCATTACCTTGATAAGTTATAT
ATGTCAAAAGATTCACAGGATTGAATTGATCTTCTGAAGACTTCACAGCATTTAGGAAAAAGTT
CGCTTAACACTTTGTGGTTAGTCAATGTGGACAATGACGTGGTGGGTGGTGTTGCTTGCATGAC
ACACACACCAAAGCATGTTTCACCCAAGTTTGCCCAAGCAATCACTTTCTTTAGTCAGCAAGCC
CAGAAACCACCTCCAGTGCTATTTGTACTTCTTCTCCAAGCTATTCTGCTAGTTAAAAAATATT
TAACTGAATCCATCACCATGTCACTGTTCTCGTCATCGTCCACATGGGGAAAACACTTACAATA
CAACTCCAGGGGGGAGGGGGGGTTTCAAATAGTTGTTCATGCGTTGGGGAGTAGAATATCAGGT
TTTGTACTTCAGGGGGTTAAGTAGAGGTTTTGGCTTTTTGCCATTATTTATAAATCATATGGTC
CTAATTATCATTTGTTCCATGCTTAATTGAACGCTAGAAACATGTAATAGTGAAACAGAACTTC
AAAATGAAGCAAATCGGCTACTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.437991281
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017