Detail information of Os11g0266800_circ_g.4


General Information
CircRNA Name Os11g0266800_circ_g.4
ID in PlantcircBase osa_circ_009039
Alias NA
Organism Oryza sativa
Position chr11: 9166935-9169612  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0266800
Parent gene annotation Tetratricopeptide-like helical domain containing protein. (Os11t
0266800-01)
Parent gene strand -
Alternative splicing Os11g0266800_circ_g.1 Os11g0266800_circ_g.2 Os11g0266800_circ_g.3 Os11g0266800_circ_g.5 Os11g0266800_circ_g.6 Os11g0266800_circ_g.7 Os11g0266800_circ_g.8 Os11g0266800_circ_g.9
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0266800-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATATATTAGCACAATCAAACTTCAGTCCTACATCTTCAGGATCTGCTCTCATCGCTTTTAAA
ACACAGTGTCTTGCTAAAGCAGCATCTTCCTTTTTCctttctgaaagtaaggaattgctttcct
tttctcccctatgaccatgtagcattgaccaactttcacatatgaactaccctgaaacaagtta
tagtatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCTGAAAGTAAGGAATTGCTTTCCTTTTCTCCCCTATGACCATGTAGCATTGACCAACTTT
CACATATGAACTACCCTGAAACAAGTTATAGTATATCAAACTAGAGAAGGGTGAAGGAAATAAA
ATATACATACAACTTCCTCAATCCCTTAATGGACTAGGTGATTGCGATGGTGTGCTTTACACCC
ATCCTTTCATTTCCAAAATATCATTTATTGATGGATTTCTGTAGGCATGTATTTATAGAATCTT
TTATGAAGGATTGCATCCTTTGTACATGTGTAAGCAAGTGACTAGTTGATCCATTGTGAATTAG
AATGTTTTCTGTAGATTTTTAAATACCTTTTTTTTATGAAGCATTAAAGCAGACAAAGCCCATT
CCCCATTCCTGATCATGGTACCATTATCAAGCCTTCTAAAGAGCATGTACATTCTAATCAAATT
TGGAACATTTGTGGCTAGCTAGAAGATCTACATGCTGTTAAAAGCACATTCTCAAATGATTAAT
TGATTTTTTTATCATATTTATGTTCAAATCAGCTAATAGGAACTGCTTTGCCCCCAACTTCTTT
CAGTAGCAGTTGCCTGGCTTCACCTCTTCTGGGTTACGTAGTTACATAATTTTATTCCACTATA
ACTCACGACTAATGGATAGGTTCAAATTTATTATGTTGAGATGGGCTTCCTTCCCCTTCCAAAA
ATTATACTCATTGGAATCAAACCAGATGTTTGTTTCCAATTACCAAGTCTATCATAATCGTATT
ATGCACTTATAGCATTACCTTGATAAGTTATATATGTCAAAAGATTCACAGGATTGAATTGATC
TTCTGAAGACTTCACAGCATTTAGGAAAAAGTTCGCTTAACACTTTGTGGTTAGTCAATGTGGA
CAATGACGTGGTGGGTGGTGTTGCTTGCATGACACACACACCAAAGCATGTTTCACCCAAGTTT
GCCCAAGCAATCACTTTCTTTAGTCAGCAAGCCCAGAAACCACCTCCAGTGCTATTTGTACTTC
TTCTCCAAGCTATTCTGCTAGTTAAAAAATATTTAACTGAATCCATCACCATGTCACTGTTCTC
GTCATCGTCCACATGGGGAAAACACTTACAATACAACTCCAGGGGGGAGGGGGGGTTTCAAATA
GTTGTTCATGCGTTGGGGAGTAGAATATCAGGTTTTGTACTTCAGGGGGTTAAGTAGAGGTTTT
GGCTTTTTGCCATTATTTATAAATCATATGGTCCTAATTATCATTTGTTCCATGCTTAATTGAA
CGCTAGAAACATGTAATAGTGAAACAGAACTTCAAAATGAAGCAAATCGGCTACTTACATCATT
ATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCTAAATTT
TCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGATGCACAT
TCTGAAGAAACACCTGCACAAGTAATACCAATTCAATAACTAAGAAACTCAAAACTATACGTTG
AAGTAGTCTTGGATACAGTATATACACAAGCACAATCTAATCTTGCAGAGTACAACCTGTTATC
AGAGCAATTTATAGTCATATCGAGGATTTATAGTGTCTAATAAACCAATGGTAGCAAAAGGTGG
GTTTTGACTAATCAAGGATAAATTATGTCAAGTGTGTGCTATAATGGAACAGAACTGGGACAAA
CCTCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGCTTTTGCCTGCAATTGTAC
TGGCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTCTCAATCAGCCTCAATGCTTCATTA
TAGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGATGTTTGTAG
TTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAGTCCCTGTA
CATCTGGACAAAAAAGTCACAAAGCAATAAGTGGAAGTCTAGAACTAACTCAGCAGTCCATATT
GTTATGTACTGGCTTCAGTGATTAGATAGCAGTTCAGATATATGAGTTCTTAGTTGTGTCATGT
GCATCCAGGTGTCTAGAGTCAAGTCTTAGCAGTTGGCATCCAGGAGTCCAAGAGTCTATAGAAG
TTAAGAGCCCTCATACTTGCTTGTGCCTTAAGCTAAATAGAGATAAGTGTCCTGTTTGGATGGT
GCTAATTGGTCTTGTTTACATGCATGTCTAGGGACCTATATGTTTGTATTCATTGACTCAAATA
GAGGCATGAAAGATCATTATATCTGTATCTCCCTCTTGTCCCTGACTACAATGGTTCCCTGCCG
CTGGCTACCAGGAAGAACCTCATTCACCAACGCTACTAGCCCATAAAAGCTAAAATCAATTTGT
AATTTATATGCACCACAAAATAACGCAAGAATTGTTATAAGCAAATAAACCTGTGCTGCTGCTT
TACGAGCAACAATGTTTGAAGGATAAATTCTGACTATCTGCTCGTATATCTCTCCAGCTTTCTG
ATAGTCATGCAAAGCGCGATATATATTAGCACAATCAAACTTCAGTCCTACATCTTCAGGATCT
GCTCTCATCGCTTTTAAAACACAGTGTCTTGCTAAAGCAGCATCTTCCTTTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.226141334
Functional Information
Coding potential Y
Potential coding position 9166989-9169592(-)
9169568-9169592(-)
Potential amino acid sequence MLHGHRGEKESNSLLSERKKEDAALARHCVLKAMRADPEDVGLKFDCANIYRALHDYQKAGEIY
EQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYN
EALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVAS
TLENLGQYEYAIKFYLMIEDVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKGKRKMLL*(-)
MRADPEDVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINL
LEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAY
LGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHNDGSSYVKV
GQCYMVIGEKRKAIPYFQKGKRKMLL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017