Plant Circular RNA Database

Detail information of Os11g0266800_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os11g0266800_circ_g.2
					
						ID in PlantcircBase
						osa_circ_009037
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 9159366-9172036  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0266800						
					
						Parent gene annotation
						
							Tetratricopeptide-like helical domain containing protein. (Os11t
0266800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os11g0266800_circ_g.1 Os11g0266800_circ_g.3 Os11g0266800_circ_g.4 Os11g0266800_circ_g.5 Os11g0266800_circ_g.6 Os11g0266800_circ_g.7 Os11g0266800_circ_g.8 Os11g0266800_circ_g.9 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0266800-01:13

General Information
CircRNA Name	Os11g0266800_circ_g.2
ID in PlantcircBase	osa_circ_009037
Alias	NA
Organism	Oryza sativa
Position	chr11: 9159366-9172036 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0266800
Parent gene annotation	Tetratricopeptide-like helical domain containing protein. (Os11t 0266800-01)
Parent gene strand	-
Alternative splicing	Os11g0266800_circ_g.1 Os11g0266800_circ_g.3 Os11g0266800_circ_g.4 Os11g0266800_circ_g.5 Os11g0266800_circ_g.6 Os11g0266800_circ_g.7 Os11g0266800_circ_g.8 Os11g0266800_circ_g.9
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0266800-01:13

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							ATCTGCTCTCTGTAAAAAGCAGTGTGGCATCACCCAATTTTTTAGTAACTTCAGGACTGTACTT
ATTCCTTGTTCCTTTCTTTCTTCCCCTTTTCCTGGCcttgatgtcaccttgtagtatgagttcc
atgcagcaagggaatatggatgctgctgaactacatagcggacataattaaagccatgtctagg
gtctggag

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	ATCTGCTCTCTGTAAAAAGCAGTGTGGCATCACCCAATTTTTTAGTAACTTCAGGACTGTACTT ATTCCTTGTTCCTTTCTTTCTTCCCCTTTTCCTGGCcttgatgtcaccttgtagtatgagttcc atgcagcaagggaatatggatgctgctgaactacatagcggacataattaaagccatgtctagg gtctggag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.091324117

Conservation Information
Conserved circRNAs	NA
PMCS	0.091324117

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							9170048-9159441(+)
9170005-9170026(-)
9159397-9170026(-)
						
					

						Potential amino acid sequence
						
							MLPSRWYEFDKFGAIRTTSCNIGIASLNLLSVKSSVASPNFLVTSGLYLFLVPFFLPLFLALMS
PCSMSSMQQGNMDAAELHSGHN*(+)
MLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKFDCANIYRALHDYQKA
GEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRN
NAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIK
EVASTLENLGQYEYAIKFYLMIEDVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKALQRMEDN
IDVRITLSSLFVDVDKSDEAIVLLSPPNNSGSKSATDQPKPWWLDGKVKMHLANIYYNKGMFED
FVGTILIPILETLNIEYANRKVRKAKKLPTNVLYERAKVLAEQRPESVFQGLRPIASPAELQKA
SRAKKLLEKRAASNEDTIKDDLQRSKQIPPISGLLTNAENHQLVLHLCQTLALLHRYWEALQVI
NRTLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYVVQQHPYSLAAWNSYYKVTSRP
GKGEERKEQGISTVLKLLKNWVMPHCFLQRADLRRQFLYYMRLCGSRRICQIHTIYLVAFIKSA
VN*(-)
MELILQGDIKARKRGRKKGTRNKYSPEVTKKLGDATLLFTESRFKEAIPILHEVVRIAPNLSNS
YHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPE
DVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVN
AQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKH
AEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHNDGSSYVKVGQCYMV
IGEKRKAIPYFQKALQRMEDNIDVRITLSSLFVDVDKSDEAIVLLSPPNNSGSKSATDQPKPWW
LDGKVKMHLANIYYNKGMFEDFVGTILIPILETLNIEYANRKVRKAKKLPTNVLYERAKVLAEQ
RPESVFQGLRPIASPAELQKASRAKKLLEKRAASNEDTIKDDLQRSKQIPPISGLLTNAENHQL
VLHLCQTLALLHRYWEALQVINRTLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYV
VQQHPYSLAAWNSYYKVTSRPGKGEERKEQGISTVLKLLKNWVMPHCFLQRADLRRQFLYYMRL
CGSRRICQIHTIYLVAFIKSAVN*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	9170048-9159441(+) 9170005-9170026(-) 9159397-9170026(-)
Potential amino acid sequence	MLPSRWYEFDKFGAIRTTSCNIGIASLNLLSVKSSVASPNFLVTSGLYLFLVPFFLPLFLALMS PCSMSSMQQGNMDAAELHSGHN(+) MLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKFDCANIYRALHDYQKA GEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRN NAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIK EVASTLENLGQYEYAIKFYLMIEDVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKALQRMEDN IDVRITLSSLFVDVDKSDEAIVLLSPPNNSGSKSATDQPKPWWLDGKVKMHLANIYYNKGMFED FVGTILIPILETLNIEYANRKVRKAKKLPTNVLYERAKVLAEQRPESVFQGLRPIASPAELQKA SRAKKLLEKRAASNEDTIKDDLQRSKQIPPISGLLTNAENHQLVLHLCQTLALLHRYWEALQVI NRTLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYVVQQHPYSLAAWNSYYKVTSRP GKGEERKEQGISTVLKLLKNWVMPHCFLQRADLRRQFLYYMRLCGSRRICQIHTIYLVAFIKSA VN(-) MELILQGDIKARKRGRKKGTRNKYSPEVTKKLGDATLLFTESRFKEAIPILHEVVRIAPNLSNS YHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPE DVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVN AQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKH AEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHNDGSSYVKVGQCYMV IGEKRKAIPYFQKALQRMEDNIDVRITLSSLFVDVDKSDEAIVLLSPPNNSGSKSATDQPKPWW LDGKVKMHLANIYYNKGMFEDFVGTILIPILETLNIEYANRKVRKAKKLPTNVLYERAKVLAEQ RPESVFQGLRPIASPAELQKASRAKKLLEKRAASNEDTIKDDLQRSKQIPPISGLLTNAENHQL VLHLCQTLALLHRYWEALQVINRTLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYV VQQHPYSLAAWNSYYKVTSRPGKGEERKEQGISTVLKLLKNWVMPHCFLQRADLRRQFLYYMRL CGSRRICQIHTIYLVAFIKSAVN*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0266800_circ_g.2

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