Detail information of Os11g0266800_circ_g.2


General Information
CircRNA Name Os11g0266800_circ_g.2
ID in PlantcircBase osa_circ_009037
Alias NA
Organism Oryza sativa
Position chr11: 9159366-9172036  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0266800
Parent gene annotation Tetratricopeptide-like helical domain containing protein. (Os11t
0266800-01)
Parent gene strand -
Alternative splicing Os11g0266800_circ_g.1 Os11g0266800_circ_g.3 Os11g0266800_circ_g.4 Os11g0266800_circ_g.5 Os11g0266800_circ_g.6 Os11g0266800_circ_g.7 Os11g0266800_circ_g.8 Os11g0266800_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0266800-01:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTGCTCTCTGTAAAAAGCAGTGTGGCATCACCCAATTTTTTAGTAACTTCAGGACTGTACTT
ATTCCTTGTTCCTTTCTTTCTTCCCCTTTTCCTGGCcttgatgtcaccttgtagtatgagttcc
atgcagcaagggaatatggatgctgctgaactacatagcggacataattaaagccatgtctagg
gtctggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.091324117
Functional Information
Coding potential Y
Potential coding position 9170048-9159441(+)
9170005-9170026(-)
9159397-9170026(-)
Potential amino acid sequence MLPSRWYEFDKFGAIRTTSCNIGIASLNLLSVKSSVASPNFLVTSGLYLFLVPFFLPLFLALMS
PCSMSSMQQGNMDAAELHSGHN*(+)
MLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKFDCANIYRALHDYQKA
GEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRN
NAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIK
EVASTLENLGQYEYAIKFYLMIEDVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKALQRMEDN
IDVRITLSSLFVDVDKSDEAIVLLSPPNNSGSKSATDQPKPWWLDGKVKMHLANIYYNKGMFED
FVGTILIPILETLNIEYANRKVRKAKKLPTNVLYERAKVLAEQRPESVFQGLRPIASPAELQKA
SRAKKLLEKRAASNEDTIKDDLQRSKQIPPISGLLTNAENHQLVLHLCQTLALLHRYWEALQVI
NRTLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYVVQQHPYSLAAWNSYYKVTSRP
GKGEERKEQGISTVLKLLKNWVMPHCFLQRADLRRQFLYYMRLCGSRRICQIHTIYLVAFIKSA
VN*(-)
MELILQGDIKARKRGRKKGTRNKYSPEVTKKLGDATLLFTESRFKEAIPILHEVVRIAPNLSNS
YHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCVLKAMRADPE
DVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQIDKAINLLEDYVN
AQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKH
AEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAIKFYLMIEDVAVHNDGSSYVKVGQCYMV
IGEKRKAIPYFQKALQRMEDNIDVRITLSSLFVDVDKSDEAIVLLSPPNNSGSKSATDQPKPWW
LDGKVKMHLANIYYNKGMFEDFVGTILIPILETLNIEYANRKVRKAKKLPTNVLYERAKVLAEQ
RPESVFQGLRPIASPAELQKASRAKKLLEKRAASNEDTIKDDLQRSKQIPPISGLLTNAENHQL
VLHLCQTLALLHRYWEALQVINRTLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYV
VQQHPYSLAAWNSYYKVTSRPGKGEERKEQGISTVLKLLKNWVMPHCFLQRADLRRQFLYYMRL
CGSRRICQIHTIYLVAFIKSAVN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017