Detail information of Os04g0548100_circ_ig.11


General Information
CircRNA Name Os04g0548100_circ_ig.11
ID in PlantcircBase osa_circ_024765
Alias NA
Organism Oryza sativa
Position chr4: 27451069-27454156  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0548100_circ_ig.2 Os04g0548100_circ_ig.3 Os04g0548100_circ_ig.4 Os04g0548100_circ_ig.5 Os04g0548100_circ_ig.6 Os04g0548100_circ_ig.7 Os04g0548100_circ_ig.8 Os04g0548100_circ_ig.9 Os04g0548100_circ_ig.10 Os04g0548100_circ_ig.12
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTCAAGAATTTTGATGATCTATTTGGAGTAAAACCTACCGCTTCTGTTCTTGTATCTCTTCT
AGATGTTTTATTTCTTAAGAAGGATGTGATTCAAAGgaaatggcagcaaattgcccaaatgcat
gctgtccccgacgttcggtgttttccttgggtcactggttaaccaaaagaccatgatatcctca
gatacaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATGGCAGCAAATTGCCCAAATGCATGCTGTCCCCGACGTTCGGTGTTTTCCTTGGGTCACT
GGTTAACCAAAAGACCATGATATCCTCAGATACAAGATTTCTACCTGCCTATATTTCATCACTG
TTGAGCCCAAGTCAAGATTTGATGGTCCCTGAAAATCTTCATGAGAGGTTATCCCTGTTCCTTT
CTCTTTCAAATGCTTCATTTTTATTGAACACCTATGTTTGTTCCACTTTAAACTTTGGGTTCTT
GATGAATTGTCTTCTTTAAACCACATCCATGACATTCTTTAACTAGCATTATTCACTTATGCTC
TTAAAATCAATTTGAGCTAACACTCGCTAGCTTACAGTGCAAGGGGGGTTATTTAAAGGTGAAT
GGGCAGGTCATTGCCATGTTAGCTGTTTAAATTAAATGCACACATGATAATATAACTATACAAG
ACAGCTGGGGATCTTTTTTTATTGGAAAATAACACATTAGTATTCTGGGTGAACAAAGAAGGCT
CCTCCATACTGGAGTTTGTATATTTAAATAGTAGTGTTCTTGCATGTTCAATTGATTCTTTAAT
TTTGTGAAACCCCGCTATATTAATGTATTTTATACTTCCCTGATCACAACAAATAATGCCCGTT
ACATGTTTCTTGGGTTTTGCAACTCCCTACCCTTCTTGTGTGTGCACAATCATACTTATCGTGT
ATGCTTAGAGCCTTAGATGCATGTTGTGTGCTAAGAAGAAGCACCCTTCTGCTTAACTAGGCAA
CTTGATTGTTTTTTCAGATTGATGTATAAAGTGTAAAATCTTCTCATATTTTGTGCATATTTTT
CCTACTATTAATTTGATGATTTCTCTAGTTGTTTTTTTTATTGTTGTTAATTTGTTGTTAATTG
GAGCATAAGTTAGTTTTTGTGTCTATTACAGATTTGACCAGTCAACAAAAGATGCTATCCTTCA
CTTCATCTTGCGCTCTGGTATGAAGCTCTCTTCTTATGGAAAGGTCAGTTGTTCTGCAATGTTG
AGTTATGTAAATGCAAGTTGATATGCACATACAGGTAGATTCCCAAAGTGATGATATTGGTTTG
GATGGGAGTTAATTTTTTTTTAAAAAAATATATATGTTGCAGTTCATGATTTTGTCAATACTGA
AAGGAGTAGGAAGCATCTTGTTTGATGTAGAAGATGTGAAGTCTTTATTGTTTGATCTTCTGGA
TCGGCGCAATCAGTATCAGAGTGGATGTGAGTCTAGGCAGATCATGTCCACCCATGAAATACAA
ATCTTGTGCTTGCTTTTGGAGGTAAGCGTGCCGGCAACATAACATGTACCATGACATATCCTTG
TTGCAGATGTGTTAATTTACTCTTATTATGTAGGTAATGTTCTCGGTTTCTAACAGTGCAAATG
TTAGCTCTGAAACATCTGAAGCTTTGCTGAAAGTTTTAAGGGTGAGAAAAACCATCAATTCTGT
ACAGACCTAGTTTATCTACTGACTACTAGGGTTAGCTCTGACGGTATGAAACTGCAGATTGATG
TTTCAGCTCAAGATGATCCTGTTGTTGTCATGCCATGTGTTACTGCACTGCAAGCTGTTCAACC
AGTATTCTTTGATTTTTTGAAGACTGATACTCAGGTTCTTTTTTTTTCTTATTAATACTTGACA
TTGTGTTGGCGTCCTTCATTTAAAAGAAAAGCATGAACTTGAATTTTGCATGAGATGTATTTCA
CGCTAAGATGTATAGCCTTTACTCCTCCTTATCACTGTACCAAGTTATTTCTATCCTCTATTCC
TAGTAACCGTATCAAGTTATCTTCTATTCCTAGTCACCAAATTCTCATTGTTCAATTATTCTAA
TGGATGATATCCTTGATTCAGCTCTTGATATCATTAGAAGATAGGATAGTTTGTTTCCTCGCCA
CTTGATGTATCATAGAGCATCCTTAACTAGTTTAGCTATCTTCTTTGACATGCACTTGATCTTA
AAAATGAAAAAAATGTATATCTTTAATGCATATTTGATTTGATTTCGAATTGCACCTCTACATA
TTACCCTTTTTATCTTATGCAACTCATCTTACATCATTTACTAGTAGATCAACTAATCTATGGT
ATTGTAAATTTGCAGGAAAAAGTATTTGCAAGCCTTATTTCTATGTTTCGAACTGAAAACACTG
AAATTCGAAATGCGGCACGAGATGCTATACTGCGAATTAATGTTAGTATTTCTATCCCTCAAAT
TTTAACCTTTTCCTTCCATATACTTTATGTAGATTTCTGATTTTATTTCATTTTATTTAGACAT
TAATGGGACAATGTACTCCCCTGCAAATCATATTTTAAACTTGGTGCCTTTGAGCGTTCAAAAA
CAGTATCATTTATTCTGTGGGCAATCTGGCAGTCATTACAAATATATATACAGATAGTACACAT
TTTCTCCCTTGGATCCCAGATACTGTTGTTTAGTACACACTTCTAGTTAAACTTTTAAAAATGT
AAGCATCAATATCTTTTTAATTGTTAGATTGGATACATGGAAGTTGACTATAGATTTTTTTTCC
CGAACCATCATAATTGTAAAGTTTTTTTTTTTTTTGCTAATATATTAATCAAAGTTGTATCTTG
GAGACTGTGCTGATGTCCAAAACATGTTATCATGACTAGGGGGAATGTATATCAATAGTAGTTT
TGTATTACAAGATGAATGGTTGTTTCCAGGGTTTCTACTTGGCTGAAAAGCCAAAACAATAGTA
AAAAGAGATAATCCATGAAACAAGGTGGTAGCATTTTACCTAGGCTTGTTCATATATAGATATT
GGATATCCGTTTCTTTATATCACTTCTGTTAATGCTTAGCTCCTTACCTATTTCTACTTATGGC
AGGTTCATGCCTCCACAGCTGTGAAATTTATTGAATTGATTGCAGCGCAAGGTGACAAAAAAAT
GAATTCAAAAAGAATAAAGAGAAAGGAGGATCTGAATCATGACATATTCAAGAATTTTGATGAT
CTATTTGGAGTAAAACCTACCGCTTCTGTTCTTGTATCTCTTCTAGATGTTTTATTTCTTAAGA
AGGATGTGATTCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.102842304
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017