Detail information of Os04g0548100_circ_ig.12


General Information
CircRNA Name Os04g0548100_circ_ig.12
ID in PlantcircBase osa_circ_024766
Alias NA
Organism Oryza sativa
Position chr4: 27451244-27451438  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0548100_circ_ig.2 Os04g0548100_circ_ig.3 Os04g0548100_circ_ig.4 Os04g0548100_circ_ig.5 Os04g0548100_circ_ig.6 Os04g0548100_circ_ig.7 Os04g0548100_circ_ig.8 Os04g0548100_circ_ig.9 Os04g0548100_circ_ig.10 Os04g0548100_circ_ig.11
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   AT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACCACATCCATGACATTCTTTAACTAGCATTATTCACTTATGCTCTTAAAATCAATTTGAGC
TAACACTCGCTAGCTTACAGTGCAAGGGGGGTTgttatccctgttcctttctctttcaaatgct
tcatttttattgaacacctatgtttgttccactttaaactttgggttcttgatgaattgtcttc
ttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATCCCTGTTCCTTTCTCTTTCAAATGCTTCATTTTTATTGAACACCTATGTTTGTTCCACT
TTAAACTTTGGGTTCTTGATGAATTGTCTTCTTTAAACCACATCCATGACATTCTTTAACTAGC
ATTATTCACTTATGCTCTTAAAATCAATTTGAGCTAACACTCGCTAGCTTACAGTGCAAGGGGG
GTT
Conservation Information
Conserved circRNAs NA
PMCS 0.128632479
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017