Detail information of Os04g0548100_circ_ig.4


General Information
CircRNA Name Os04g0548100_circ_ig.4
ID in PlantcircBase osa_circ_024758
Alias Os_ciR9488
Organism Oryza sativa
Position chr4: 27447495-27450781  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0548100_circ_ig.2 Os04g0548100_circ_ig.3 Os04g0548100_circ_ig.5 Os04g0548100_circ_ig.6 Os04g0548100_circ_ig.7 Os04g0548100_circ_ig.8 Os04g0548100_circ_ig.9 Os04g0548100_circ_ig.10 Os04g0548100_circ_ig.11 Os04g0548100_circ_ig.12
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGCTTTGTCTGAAACCAGTAGTTTGGATGAAAGCTTATGTGTGCAGCTTCTGCTTGGCTTT
CCTTGTGTTATGCTCCCACTTGCTCATGAAAATAAGaacttaatcaacatgcaagatgcaataa
tacacaatatgtatgatgatgatctaagtgttgttgaagctgccttatccatagaaggactagc
tgctgttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACTTAATCAACATGCAAGATGCAATAATACACAATATGTATGATGATGATCTAAGTGTTGTTG
AAGCTGCCTTATCCATAGAAGGACTAGCTGCTGTTGCCAGTCCTGTTAGCCTTCTTAAAGTGTA
TGATGATCTGCTAGCCAATTGCATCAACATCATTCACAAAGGTGGGTAATGTTCATTGGGTGTC
TGATTGGCCTTCTGTTGGCCTCTTATTTTGTTTTAATTATTTGATGTTCTAGAGGAATTATTAG
AGCTTAGCTGCTAGGATTCTATGTACTCACAAGGATCTGTAGCTAGTTTGGTCTACTTGTCATA
TAAAACTTTGCAAGATGTCAAACTTCTAGAGGAGATAAAAGCTTAAATAAAATACAAGTATTTG
TTTTGTGCCCCAGACCGACGTAGAAAAAAGCAAAATAAGATATATTAAGAGTGTCGATGTTATT
ATTTTACAGCACTTACTGTTCAGTACATACCAATAGAGATTTCTTTCCAGTAAGTTCACCTTCT
CGTATGTTGGTTTATTCTCCTATGTTTAAACCTTGGTGGGATCCCCATGTTTTGTCGAGAATGC
AAAGTGAGATGTCCTGCAATACACTGTTACTTTATAAACTACTTGTGCCGCATGGAAAAATAGT
TGTCACCTTCTGCACAGGCATTGCCCTTCTTATTTTTCTGACAATACCATATGCCTGTTTTTTT
TCTTGCTAATTAGGTGGTCCAAAAGCATCAAAAGCTTGCGACGTCGCTGTTTCATGCTTGGAAA
AGATAATTATAGAGTATCGGTTGCATTATATTGAACATGCAAAGGACATCGCTGCAGTAGTATT
TCGTCTCCTCATTGTTCACCCTAAGGTTAACTTATTTTCTATCACTATCCGCTTCACGTTTTTT
TTACTTTCCGCAACTTTTCTCACTTCAATGTTGAAATCAAAATGCAGACTGTCAGGGTAAACTT
GAAGGCCTTAGAGCTAGCTAAGAGTATACAGTGGGAATTTTATACAAGTAGTTCACTTGTATAC
AATGTGATCACAACTGATAAAATGAAGGTGAAGTTTCTTTCTGGCTGTTTTCCATCCTGTCCTA
TGTTGATCATTGCTGTGCTCTTATTGAGTGACCCCCCACATACAATTTTTCTGCAATTAGCGGC
GCCTCATTGATTTCGTTTTCATTGTATCCATATATTGAACTCTTGTAAACATTTGGTTAGATAT
GTGGCGGTTATTACTTTTATGAACGAAAATCTTTTGTTTCCATATCTAATAATCTATTGCTATC
AAAAGTTCAAAACATATGATTTTCCCCCTCCCATTTAATCGTTTTAGTAATTACATTTCTTATT
GTATTCTCACAGGGCATCAGTCCAGAGTCTGTAGCTTCCATTAACATGAAGAATATCAAAGCAT
TTTCTGAAACTTTCCTTGCGAACCCAAATAAGCATGTGGAGTGGTTGGCTGACGCTGGAAAAGG
AAGTGCATTTTCAAGAGCTTTGTTTCTACTCATAATATTGCAGTCACTGCTTGCTCCTGCTGAA
GGTATGCCCATCCTTGTATCTACAGTTATGCTCTACCATTTCTAGTAACCTTCTGATGGTTGCA
ATATAAGTCTCTTCAGCTGTGGATATTATCATGTGTTCCCTATTACTGTAAGATCTAATACGAT
GTCTTAGTCACTCTTGAAATCCTAACAGATATGATGTGTTCTATGCAAGGGCTATGCGTGGGCA
TATATAATTCTAAACTAAATTTATAGTGTGCTTTGCTACAAAAAAGAACTTAGCTACATATTGC
TTGCAATAATGGTCAACATGAATCCATGAATGCATGTTACAAAAGACTTTGTTTGTCACTACTA
CATGTATTCCTATTCCATTATATCCGACCTCAGCCATAGATGTCATAGACGGAGGCTTAAGATT
CTTATTAATGTGTGAATTTCTATCTTTTTGGCCTTCTCAAACTAATACTGGGGTTCCTGAGAGA
GCCTCCGACTAGCATAAAGAAAGATTCCAACTTTAGTTTATAGTAGATTTGATGCTAGAATCTG
TCTTCCTCTTAGCATGTGTCAGGTCAAAAGATCTCACAAACTATAGTTAGTGTACGGCTAATGC
AAAACTATTCCTACCATCTATTAGACTTAAGCTATACTAGCAACATAGAGGAACTGAAGAGTTA
ATGTGTCGTTTCCTTTGGGCAGTTTTGGACATGCAAATGAGTCTGTGCCAAGCTTGTCTGCCAG
TTCTCAAGAACAAGTGGTGTCAAATAAAGCCCAAAGATGGTCGTGTTGGTGACGAGGTACTTCT
GATTTAGTTTACTATTTTGTGTTGCAACATTGGAAGAATTGGCCCATTATGTAGGCCTTGGAGT
GATCTTTTGTGTTTGTTTATGCAGATCAACATTGATAAGCTCGAGAAGTGCATTACAGAACTGG
TGAAGCATGTTTTCAATAATGACACAGAGGCATTGAATGCCAGAATTCTTGTATGCATATTTTG
GGGCTTGCTAAGAGTACAGTCATCCTATATCAAGCAGAGTTCTATGGTAATGCAACTGCTAACC
AGTAAAATCTTCATCTTTTTTCTAATGAATTCTGATTATTTTGAACACCGTCCTCAATCTATAT
TTTTATGCAGATTAATGATGGTGGAAATACATTGCTTGATGATTTGTTTCTCTTCTTCATCACA
TCACCTGGAAAAATCATCTTCCAGAAGCATCTACAGTATCTAATGGTTAACTGCACCAGGGCAC
CTTTTCAGTTTATCTCCAAATACTTTGTAGATGAAGGTTTGTTACAATTATTCTGTCTTAGATA
AACTCATCTTGTCATTGTATTCCAGCTAATTGATAGATGAAAAACCTTGATAATCTTCTGACTT
CCGGTGTCATGCTTTTATCTAACCTCTTTTGCCTTCACTTTGACGTGTCAGTTGTCCATCTCAT
TTTACAACCAGTTCAACTCCTTATGTCCTCAGAATAGTTTGTTAAACTGCGATACTATTCTCAA
TCTTATAATTCATTGGTGCCTACTGACTAGTTCATATGTTGTTTGATTGCTCTTCTATTATTAT
TTTTTTCATTTCATTATTCCGTCAAGCCGTTTCCAATTTTTATGGACTTTTATGCAGGTTTTTC
AGCTGGAGTTCGAGTGGAGAGTCTTCTTATGCTTGCTTCTATTTGTTCTGTATGTGCTTTGTCT
GAAACCAGTAGTTTGGATGAAAGCTTATGTGTGCAGCTTCTGCTTGGCTTTCCTTGTGTTATGC
TCCCACTTGCTCATGAAAATAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.203997569
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015