Detail information of Os04g0548100_circ_ig.2


General Information
CircRNA Name Os04g0548100_circ_ig.2
ID in PlantcircBase osa_circ_024756
Alias Os_ciR5434
Organism Oryza sativa
Position chr4: 27445880-27448545  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0548100_circ_ig.3 Os04g0548100_circ_ig.4 Os04g0548100_circ_ig.5 Os04g0548100_circ_ig.6 Os04g0548100_circ_ig.7 Os04g0548100_circ_ig.8 Os04g0548100_circ_ig.9 Os04g0548100_circ_ig.10 Os04g0548100_circ_ig.11 Os04g0548100_circ_ig.12
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTAAACTTGAAGGCCTTAGAGCTAGCTAAGAGTATACAGTGGGAATTTTATACAAGTAGTTCA
CTTGTATACAATGTGATCACAACTGATAAAATGAAGgctggcgcgctgatgattattggagtac
tggcaacacgagaaacactagccccaaaacttgttcagaatttgatcttctttgttgcaagggc
tgcacagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGGCGCGCTGATGATTATTGGAGTACTGGCAACACGAGAAACACTAGCCCCAAAACTTGTTC
AGAATTTGATCTTCTTTGTTGCAAGGGCTGCACAGCATGATGCGCTGGACACGATTGATTTACC
ATGGCTCCGTGTTACAGTGATGGCTATTATAAGTCTTGTTCAGGTCTCATCTGACACCTTTTTT
TTCCGATAAGAACACTTAGATTGTGTACGGGACATCTGTTTTTTGTATTTCATATGCCAACGTA
AATGTTAACTAGAAAGTTTGATATTCATCCATTATTTTTGCAGTCACAATCAGTTACTGATTTC
CCTAAGAAGCCATTGATGATTCTGAAAGACATCAGGTAACATTGTCTTTTGTCTTGTTTTTGCT
ACACGCACACGCACGCGCGCACACACACACTTCATGTATATATTTTGTCTCTTATTTTCTCCTT
TTGTTAGCTAAGCATTAGTTATTTTGTGCTGATTTCTTTTCCAGGGATTTTTCTGGCATCCTTT
CTGTATTATGCTGTGAGTTTAACATTGAAAGGTTCATTAGGCTTTATGTTGAATCATTGGTTGG
TTACAGGTGATTTTTCTTATGGATTATTTGTGTAAATTTCTCTTATCTTGTCACTGCATTAGTT
ATGACTCTACAACATGTGAACAGTTCTTCTGACGATTCCTGCCACTCACACCTGATTGAAATTG
TTGAGACCCTAAACATAGAGAAGTTTGTTGAAAGGATTGTGTACAAGGTTCTTGACCACTGTGT
TAAGGCATCTCAGGCAGCAGAAAACCTTGATATGAACCGCACAGGTTGGTGGTTATTAGATCTG
CTTCATTCTGTTTTAAATTGATCAAGTGATCTATTTTTGGTCATCCTCTCTGTGCACAGACTGA
TGCCCATCATATGTAGATGCCTTGTGATCTTTATATTCCAGCTATCTCATTAGCAAAAGATCAT
ATAGAAGACAATTTTATCCTCATTGCAACTGACTTATTGTTCCTCAGGTCTATGGTCAAAGAAA
ACCTTGAATGTAATTGGAAAAAAATATCCAAAAGAGCTTCGCAATGCTATCCATAAATTTCTTG
AGGTACAATCTGGCAAACTTGTCACCTATGTAACTTCTTGTTTCTATATTCTGGTTTTTGCTTA
CCTTTTTTGAACTTCTGATGTTGATTCAAAACATTAATTCATCAGAACTCCGAAGTTAACTCAA
TTGGAGAGGATTTTGCTTCCAATTTGTTGGGCTTAGTGTTTGATGAAAGCAAGGGCATGCCAAC
TGAAATTTCTGATTCTAACATTTGGTTCAGTCTGGACCACCCTAAGGTATGTTCTGATATAGTC
AATTTGGTGTGCCATTTGGCCAATAGTTTGCCTTGTTCTATGTTCTGGTTGTTGCTATGGTTCA
AATTGTTCTATTCATGATGCAGGCTGAAGTCCGTAAATCTGCTCTGTCCAAAATTGCTACATCC
AATATCTTTAAGAACCATAATCTAAATCCACAGGTAATTGTACATTGTTGTATGTATGTATGTC
CATGCAATTTATGTGCCTTCTTGTGTTTAGAGCTTTCTTTGTTCAAATGTTGACTGTTGTCTTA
TCTGGGTTATTGCAGAACTTAATCAACATGCAAGATGCAATAATACACAATATGTATGATGATG
ATCTAAGTGTTGTTGAAGCTGCCTTATCCATAGAAGGACTAGCTGCTGTTGCCAGTCCTGTTAG
CCTTCTTAAAGTGTATGATGATCTGCTAGCCAATTGCATCAACATCATTCACAAAGGTGGGTAA
TGTTCATTGGGTGTCTGATTGGCCTTCTGTTGGCCTCTTATTTTGTTTTAATTATTTGATGTTC
TAGAGGAATTATTAGAGCTTAGCTGCTAGGATTCTATGTACTCACAAGGATCTGTAGCTAGTTT
GGTCTACTTGTCATATAAAACTTTGCAAGATGTCAAACTTCTAGAGGAGATAAAAGCTTAAATA
AAATACAAGTATTTGTTTTGTGCCCCAGACCGACGTAGAAAAAAGCAAAATAAGATATATTAAG
AGTGTCGATGTTATTATTTTACAGCACTTACTGTTCAGTACATACCAATAGAGATTTCTTTCCA
GTAAGTTCACCTTCTCGTATGTTGGTTTATTCTCCTATGTTTAAACCTTGGTGGGATCCCCATG
TTTTGTCGAGAATGCAAAGTGAGATGTCCTGCAATACACTGTTACTTTATAAACTACTTGTGCC
GCATGGAAAAATAGTTGTCACCTTCTGCACAGGCATTGCCCTTCTTATTTTTCTGACAATACCA
TATGCCTGTTTTTTTTCTTGCTAATTAGGTGGTCCAAAAGCATCAAAAGCTTGCGACGTCGCTG
TTTCATGCTTGGAAAAGATAATTATAGAGTATCGGTTGCATTATATTGAACATGCAAAGGACAT
CGCTGCAGTAGTATTTCGTCTCCTCATTGTTCACCCTAAGGTTAACTTATTTTCTATCACTATC
CGCTTCACGTTTTTTTTACTTTCCGCAACTTTTCTCACTTCAATGTTGAAATCAAAATGCAGAC
TGTCAGGGTAAACTTGAAGGCCTTAGAGCTAGCTAAGAGTATACAGTGGGAATTTTATACAAGT
AGTTCACTTGTATACAATGTGATCACAACTGATAAAATGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.106717701
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015