Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G03550_circ_g.1 |
ID in PlantcircBase | ath_circ_000447 |
Alias | 1:886696-887137 |
Organism | Arabidpsis thaliana |
Position | chr1: 886696-887137 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G03550 |
Parent gene annotation |
Secretory carrier-associated membrane protein 2 |
Parent gene strand | - |
Alternative splicing | 1_circ_igg.3 AT1G03250_circ_g.1 AT1G03260_circ_g.1 AT1G03260_circ_g.2 AT1G03260_circ_g.3 AT1G03270_circ_g.1 AT1G03270_circ_g.2 AT1G03280_circ_g.1 AT1G03290_circ_g.1 AT1G03290_circ_g.2 AT1G03350_circ_g.1 AT1G03360_circ_g.1 AT1G03365_circ_g.1 AT1G03365_circ_g.2 AT1G03380_circ_g.1 AT1G03380_circ_g.2 AT1G03430_circ_g.1 AT1G03440_circ_g.1 AT1G03440_circ_g.2 AT1G03445_circ_g.1 AT1G03457_circ_g.1 AT1G03475_circ_g.1 AT1G03475_circ_g.2 AT1G03475_circ_g.3 AT1G03475_circ_g.4 AT1G03475_circ_g.5 AT1G03475_circ_g.6 AT1G03475_circ_g.7 AT1G03475_circ_g.8 |
Support reads | 1/1 |
Tissues | root;leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G03545.1:1 AT1G03545.2:2 AT1G03550.3:3 AT1G03550.6:3 AT1G03545.1:1 AT1G03550.5:3 AT1G03550.4:3 AT1G03550.1:3 AT1G03550.2:3 AT1G03550.7:3 AT1G03545.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.199157655 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |