Detailed infomation of each circRNA
General Information | |
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CircRNA Name | 1_circ_igg.3 |
ID in PlantcircBase | ath_circ_000418 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 792754-889524 JBrowse» |
Reference genome | TAIR10.38 |
Type | igg-circRNA |
Identification method | CIRI, find_circ |
Parent gene | NA |
Parent gene annotation | NA |
Parent gene strand | NA |
Alternative splicing | AT1G03250_circ_g.1 AT1G03260_circ_g.1 AT1G03260_circ_g.2 AT1G03260_circ_g.3 AT1G03270_circ_g.1 AT1G03270_circ_g.2 AT1G03280_circ_g.1 AT1G03290_circ_g.1 AT1G03290_circ_g.2 AT1G03350_circ_g.1 AT1G03360_circ_g.1 AT1G03365_circ_g.1 AT1G03365_circ_g.2 AT1G03380_circ_g.1 AT1G03380_circ_g.2 AT1G03430_circ_g.1 AT1G03440_circ_g.1 AT1G03440_circ_g.2 AT1G03445_circ_g.1 AT1G03457_circ_g.1 AT1G03475_circ_g.1 AT1G03475_circ_g.2 AT1G03475_circ_g.3 AT1G03475_circ_g.4 AT1G03475_circ_g.5 AT1G03475_circ_g.6 AT1G03475_circ_g.7 AT1G03475_circ_g.8 AT1G03550_circ_g.1 |
Support reads | 2 |
Tissues | root, inflorescences |
Exon boundary | Yes-No |
Splicing signals | CT-AC |
Number of exons covered | NA |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.568401475 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | ath-miR414 ath-miR5021 ath-miR5658 ath-miR865-3p ath-miR8172 ath-miR779.2 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |