Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G03290_circ_g.1 |
ID in PlantcircBase | ath_circ_000426 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 809409-810234 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder |
Parent gene | AT1G03290 |
Parent gene annotation |
ELKS/Rab6-interacting/CAST family protein |
Parent gene strand | + |
Alternative splicing | 1_circ_igg.3 AT1G03250_circ_g.1 AT1G03260_circ_g.1 AT1G03260_circ_g.2 AT1G03260_circ_g.3 AT1G03270_circ_g.1 AT1G03270_circ_g.2 AT1G03280_circ_g.1 AT1G03290_circ_g.2 AT1G03350_circ_g.1 AT1G03360_circ_g.1 AT1G03365_circ_g.1 AT1G03365_circ_g.2 AT1G03380_circ_g.1 AT1G03380_circ_g.2 AT1G03430_circ_g.1 AT1G03440_circ_g.1 AT1G03440_circ_g.2 AT1G03445_circ_g.1 AT1G03457_circ_g.1 AT1G03475_circ_g.1 AT1G03475_circ_g.2 AT1G03475_circ_g.3 AT1G03475_circ_g.4 AT1G03475_circ_g.5 AT1G03475_circ_g.6 AT1G03475_circ_g.7 AT1G03475_circ_g.8 AT1G03550_circ_g.1 |
Support reads | 9 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G03290.1:4 AT1G03290.2:4 AT1G03290.6:4 AT1G03290.4:4 AT1G03290.5:4 AT1G03290.3:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.168551352 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |