Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G03475_circ_g.2 |
ID in PlantcircBase | ath_circ_000440 |
Alias | Ath_circ_FC0156 |
Organism | Arabidpsis thaliana |
Position | chr1: 869454-870227 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder, CIRI-full |
Parent gene | AT1G03475 |
Parent gene annotation |
Coproporphyrinogen-III oxidase 1, chloroplastic |
Parent gene strand | - |
Alternative splicing | 1_circ_igg.3 AT1G03250_circ_g.1 AT1G03260_circ_g.1 AT1G03260_circ_g.2 AT1G03260_circ_g.3 AT1G03270_circ_g.1 AT1G03270_circ_g.2 AT1G03280_circ_g.1 AT1G03290_circ_g.1 AT1G03290_circ_g.2 AT1G03350_circ_g.1 AT1G03360_circ_g.1 AT1G03365_circ_g.1 AT1G03365_circ_g.2 AT1G03380_circ_g.1 AT1G03380_circ_g.2 AT1G03430_circ_g.1 AT1G03440_circ_g.1 AT1G03440_circ_g.2 AT1G03445_circ_g.1 AT1G03457_circ_g.1 AT1G03475_circ_g.1 AT1G03475_circ_g.3 AT1G03475_circ_g.4 AT1G03475_circ_g.5 AT1G03475_circ_g.6 AT1G03475_circ_g.7 AT1G03475_circ_g.8 AT1G03550_circ_g.1 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G03475.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.183672352 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
869897-869456(-) |
Potential amino acid sequence |
MLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGR IESILVSLPLSARWEYDHIQKQACDKFDPSFYPRFKKWCDDYFYIKHRDERRGLGGIFFDDLND YDQEMLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRGRYVEFNLVYDRGTTFGLK TGGRIESILVSLPLSARWEYDHIQKQACDKFDPSFYPRFKKWCDDYFYIKHRDERRGLGGIFFD DLNDYDQEMLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRGRYVEFNLVYDRGTT FGLKTGGRIESILVSLPLSARWEYDHIQKQACDKFDPSFYPRFKKWCDDYFYIKHRDERRGLGG IFFDDLNDYDQEMLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRGRYVEFNLVYD RGTTFGLKTGGRIESILVSLPLSARWEYDH(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |