Detail information of BGIOSGA016994_circ_g.4


General Information
CircRNA Name BGIOSGA016994_circ_g.4
ID in PlantcircBase osi_circ_014708
Alias Chr04:30287629_30288030(ZS97RS2), Chr04:30239056_30239457(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28346521-28346922  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA016994
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA014482_circ_igg.1 BGIOSGA016994_circ_g.1 BGIOSGA016994_circ_g.2 BGIOSGA016994_circ_g.3 BGIOSGA014479_circ_g.1 BGIOSGA016995_circ_g.1 BGIOSGA014476_circ_g.1 BGIOSGA014475_circ_igg.1 BGIOSGA014475_circ_g.1 BGIOSGA014475_circ_g.2 BGIOSGA014474_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AA
Number of exons covered BGIOSGA016994-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCAATAACCAGCAGAATTCATTTTGTTACTTCATTAATGAATGTTTATGGTTATGTTAGTA
GCAAAAAGAAGTTAGTGCCATGACTTGTTTGCGTAAtgtaagtatagtgttgacacctcctgat
gtgctatataactatgttatatattattctggtatagctgggatgtgtacaaaaatgaatgtgc
aagcagcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTAAGTATAGTGTTGACACCTCCTGATGTGCTATATAACTATGTTATATATTATTCTGGTATA
GCTGGGATGTGTACAAAAATGAATGTGCAAGCAGCGGATGCAATAAAGTTTGTTCAATTAGTTA
AGACAATTAAAGGCTTTGCATTGGATTGTTTAGTATTGAGGTGGAAAACCAACCATAGTACCTG
AACTACCTAGGTCTTGAAACTCTTTCAATCCATTATTGGGATCACATATGCTCTAGTAGGTGGT
TAGCTGTCCAGTCATGTGCTTTACTTAACAAAGGCCTAGGGACTTCTCTTCAATAACCAGCAGA
ATTCATTTTGTTACTTCATTAATGAATGTTTATGGTTATGTTAGTAGCAAAAAGAAGTTAGTGC
CATGACTTGTTTGCGTAA
Conservation Information
Conserved circRNAs osa_circ_025006
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021