Detail information of 1_circ_ag.4


General Information
CircRNA Name 1_circ_ag.4
ID in PlantcircBase ath_circ_002106
Alias NA
Organism Arabidpsis thaliana
Position chr1: 3853758-3857146  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G11400_circ_g.1 AT1G11400_circ_g.2 AT1G11400_circ_g.3 AT1G11400_circ_g.4 AT1G11430_circ_g.1 1_circ_ag.2 AT1G11430_circ_g.3 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G11480_circ_g.1 AT1G11545_circ_g.1 AT1G11580_circ_g.1 AT1G11580_circ_g.2 AT1G11580_circ_g.3 AT1G11580_circ_g.4 AT1G11580_circ_g.5 AT1G11650_circ_g.1 AT1G11660_circ_g.1 AT1G11660_circ_g.2 AT1G11670_circ_g.1 AT1G11680_circ_g.1 AT1G11720_circ_g.1 AT1G11720_circ_g.2 AT1G11750_circ_g.1 AT1G11750_circ_g.2 AT1G11750_circ_g.3 AT1G11750_circ_g.4 AT1G11750_circ_g.5 AT1G11780_circ_g.1 AT1G11790_circ_g.1 AT1G11790_circ_g.2 AT1G11840_circ_g.1 AT1G11840_circ_g.2 AT1G11840_circ_g.3 AT1G11840_circ_g.4 AT1G11840_circ_g.5 AT1G11850_circ_g.1 AT1G11850_circ_g.2 AT1G11850_circ_g.3 AT1G11860_circ_g.1 AT1G11860_circ_g.2 AT1G11860_circ_g.3 AT1G11860_circ_g.4 AT1G11860_circ_g.5 AT1G11870_circ_g.1 AT1G11880_circ_g.1 AT1G11880_circ_g.2 AT1G11880_circ_g.3 AT1G11880_circ_g.4 AT1G11890_circ_g.1 AT1G11890_circ_g.2 AT1G11890_circ_g.3 AT1G11890_circ_g.4 AT1G11910_circ_g.1 AT1G11910_circ_g.2 AT1G11910_circ_g.3 AT1G11910_circ_g.4 AT1G11910_circ_g.5 AT1G11910_circ_g.6 AT1G11910_circ_g.7 AT1G11910_circ_g.8 AT1G11910_circ_g.9 AT1G11910_circ_g.10 AT1G11910_circ_g.11 AT1G11910_circ_g.12 AT1G11930_circ_g.1 AT1G11950_circ_g.1 AT1G11960_circ_g.1 AT1G11960_circ_g.2 AT1G11960_circ_g.3 AT1G11960_circ_g.4 AT1G11960_circ_g.5 AT1G12000_circ_g.1 AT1G12000_circ_g.2 AT1G12000_circ_g.3 AT1G12000_circ_g.4 AT1G12000_circ_g.5 AT1G12000_circ_g.6 AT1G12000_circ_g.7 AT1G12000_circ_g.8 AT1G12050_circ_g.1 AT1G12050_circ_g.2 AT1G12080_circ_g.1 AT1G12080_circ_g.2 AT1G12080_circ_g.3 AT1G12080_circ_g.4 AT1G12080_circ_g.5 AT1G12080_circ_g.6 AT1G12080_circ_g.7 AT1G12080_circ_g.8 AT1G12080_circ_g.9 AT1G12080_circ_g.10 AT1G12090_circ_g.1 AT1G12090_circ_g.2 AT1G12090_circ_g.3 AT1G12090_circ_g.4 AT1G12090_circ_g.5 AT1G12110_circ_g.1 AT1G12110_circ_g.2 1_circ_ag.3 AT1G04927_circ_g.1 1_circ_ag.2 AT1G12200_circ_g.1 AT1G12220_circ_g.1 AT1G12230_circ_g.1 AT1G12230_circ_g.2 AT1G12230_circ_g.3 AT1G12230_circ_g.4 AT1G12240_circ_g.1 AT1G12240_circ_g.2 AT1G12240_circ_g.3 AT1G12270_circ_g.1 AT1G12270_circ_g.2 AT1G12270_circ_g.3 AT1G12270_circ_g.4 AT1G12270_circ_g.5 AT1G12290_circ_g.1 1_circ_igg.2 AT1G12290_circ_g.3 1_circ_igg.4 AT1G12310_circ_g.1 AT1G12310_circ_g.2 AT1G12330_circ_g.1 AT1G12330_circ_g.2 AT1G12330_circ_g.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G12350_circ_g.1 AT1G12350_circ_g.2 AT1G12350_circ_g.3 AT1G12360_circ_g.1 AT1G12360_circ_g.2 AT1G12360_circ_g.3 AT1G12360_circ_g.4 AT1G12360_circ_g.5 AT1G12360_circ_g.6 AT1G12360_circ_g.7 AT1G12380_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACCGATAATAGTAATGGTAATATCACAAGTAGCAATGGGTTCGGTGAATGCACTTGTGAAGA
AAGCTCTTGATGTTGGTGTGAACCATATGATCATTGgaaaataataccgaaaataacgtttagg
ctaatggtcgatcatttcatcagtggtttgctcgggtttgtcttctcacaatttcttatgttct
tttgtcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAATAATACCGAAAATAACGTTTAGGCTAATGGTCGATCATTTCATCAGTGGTTTGCTCGGG
TTTGTCTTCTCACAATTTCTTATGTTCTTTTGTCGTCCATTTTCCATTTTCCTTTTCCATTATA
CATTGATTGTTTCCACAGAAGAAAGATTTTCTTTCAAGTGAGCATAAAATCTTCATAAGCTAGC
TAAATTGTTTTTAATCTTAGCTTAGTTTTGGGTTTAAATTTGCAGGGCGAGTTTGATGCAATTT
TTCTATTTGCTTGGTCTGTCCTACACGTCAGCAACTGTTGCGTGTGCTTTGGTAAGCTTGATGC
CTGCAATCACCTTTGCTTTCGCTCTTATTTTGAGGTAATTATGGAACCATCTAACTTCTTTATC
ATTAAAATAAGTACTGTATTTACTATTACTATGCAATGGGTTCATGCAGGATTTATTCGTATTT
GTTATGTATACAGTGCATATAATTTCTTTTGTTTTTTCATCAAGCATATTATACTTCTATATAT
AGAAATACTCAAAAGAACCTTACTCATAAATTATCTCAAATTTATCATCTAAAAGGTTATATTA
CTTTTCAGAACTGAGAAGATAAAAGATCTAAAGACCCAAGCAGGAATGATAAAAGTGATGGGAA
CTCTAATATGTATAAGTGGAGCTTTGTTCTTAACATTTTACAAAGGCCCTCATATATCAAACTC
TCACTCTCACCTAGAGGCTCTTCCTCACAACAACAGCGATCACAACACCAAGAATTGGCTTCTT
GGATGTCTCTACTTAGTCATAGGAATCGTGTTGCTATCTCTATGGATATTGTTTCAAGGGACTT
TAAGCATCAAGTATCCTTGCAAATTCTCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCA
ATGTGCTCTATTGAGTCTTTACAAGAGTAGAGACCTTAAACATTGGATCATCGACGATGGATTT
GTGATTGGTGTCATAATATATGCTGTAAGTTATAATACTATATTATCAGAAATCTTAACATTTT
TATAAATTATAATGTAGTATATATGTAAATAATTAAATAAATTTTGGGGTTTACCTAATATTAC
CTTATTACTATACACGTATTATAGGGAGTGATAGGACAAGCAATGTCGACTGTAGCAGCGACAT
GGGGAATAAACAGATTAGGAGCTGTTTTCGCATCAGCAATTATGCCAGTTTCTCTCATATCGGC
TACTCTATTCGATTTCCTTATCTTACACACTCCTTTATACCTCGGAAGGTGCTCTCTTCGATCA
TCTCTATGAAATTTTTTGTATAGCTTTATAGATGTTAATGTATTAGGTTCATGCTCGTATTACT
AATTACAATTTATTTTGTAACTTTTGCTATACAGTGTGATTGGATCAGTAGGGACAATAATAGG
TCTCTACGTGTTCTTGTGGGGTAAGAACAAAGAAACGGAAGCAGACATAACTACATTGTCTTCT
CGGATGAACAACGAAGATCAACGAGTCTAGGTCGCCCATTTAATCAAATAATATTGTTGTCATA
GAAAGATTCATATGGCTTCATTGTCGTAAATTAGTATTTACTACTGAATACATTTACCGTAAAG
ACCAGTCATAAATATTTAGATTTAAATTGTGCAAGCACACTCACGTTAAAGACCAGTCATAAAT
ATTCAGATTCAAATTGTGCAAGCAGTTTGTATAATTCATACTTTTCGTTTGCAGATTTATAATT
TCGTAAAGAGATAACAAAACAGATTTGTTATAATATTCAAAACTAACCAATATAAAGCATATAT
GATATATCAAAACATTTCACAACAGATCTGTTAAAAGAGCCTCGTAATATTGTTTTTAGTTTCA
AAAGCTCTGTTTCTTGGATTATTTTCGTGCTGATTTTAAATGTGTTGCGTTTTGAGTTTGTAGC
CTGTTGCTAAAACAGTAAGAATTTAAGGTCTAGAAAAAATAAAGACCAATTGTAATTAGTACTA
CTGTATATATATTATGCACTACTGGAGTGAAAATGCCCCGTCCATTTTTTCTAAGCCTTACCTT
AATCTAGAATAGCATCTGCTTTTTGTCCCTACAAAGTTCGACGGACAAAATAAAGGAAGGCAAA
ATTTCGATACCCATATTGGGGAGAAACAACTATATACTAATACAGTATAATTTTTTTCATTAAC
TTCTATATTGAAATGTATAACAATTATTATGTGCATTATAAATAACAAAAACGAGGTACTGCAT
GGATCCAGTGAAAGGACAGAGCGTAAAAGGGATCGAATCCAAATTGGGAACAATAAAATGGAGA
ATTATTGAATGAGAGTTGCAAAAATCTCATATAATTATGATAACTTTTTCCCATCATATCGAAT
CAGAATTCAATATGACGTGGTCATCGTAGATGGGGAATTCAGTATAATACTTTAGTGTTTATGT
GTCATTAGATTACACTAAGTATAGATTATACCGACACTGTTTTACTTCATTTGCATGACACGGG
TGATAACGCCAATGTATTGGTGTCTCATATAACGTATAGAATGGAAAGCTAAGGTATCGGTGTC
TCATGGAACGTGTGATAAAAGCCAATGTATCGGTGTCTCATGCATTTCTACTAAATATAAAAGT
AAAAATAATACAGTAAAGGCAATCGTCATGTATATATCGCAACACTGACCTGAAAAATAAATAA
AAAATATTTTACCGCAGTAATTATATTTGCGACAACTTCTTAAACTTAAAGCTAACGATTTAAT
CCATTACTCAATAAGAATATGCTCGGGTTTGTGCTTTGTTCCCTCCTCACAAACACTTATCTTA
TATAAAATAAAGTTTATTTTTTAGATTAGTCTTAACCAGAACAACAAAAAAATATATACAAATT
AATTAGCTAGTTGTGTGGGTGGGAACATTCAAACTATTTAAATATTTTGACAAAAAAAAATTTT
ATTATTTTTTTTTACTTTTCACACATAATGCGGAACAAGATTCTAATATTATTTAAAATGAACT
CGAGTAGACACCACTAAGTTTTTTTGTAAAAAATGTTTTTGATAGAAAGACAACTAAGTTAATA
CAACAATTCTTCAACTCAGGGTCTTTTCTATTAGAATTAGAGAACCCATACACACATGTTTCTT
ATATATATAGAGGAAGGTTTGTGGTTGCCAAACTCAAAGCACATTGGGTTTCAATTCTTTTTAA
CGCACATACACCAAATGACATAGAAAGAAAGAGAGGACGAGAGAGGGATGGGTGAGGATATGCG
AGTAGTGAAAGTAGAATCAAAATGGCCACCGATAATAGTAATGGTAATATCACAAGTAGCAATG
GGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTTGGTGTGAACCATATGATCATTG
Conservation Information
Conserved circRNAs NA
PMCS 0.160424472
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017