Detail information of 1_circ_ag.7


General Information
CircRNA Name 1_circ_ag.7
ID in PlantcircBase ath_circ_002109
Alias NA
Organism Arabidpsis thaliana
Position chr1: 3854870-3858624  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G11400_circ_g.1 AT1G11400_circ_g.2 AT1G11400_circ_g.3 AT1G11400_circ_g.4 AT1G11430_circ_g.1 1_circ_ag.2 AT1G11430_circ_g.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.8 AT1G11480_circ_g.1 AT1G11545_circ_g.1 AT1G11580_circ_g.1 AT1G11580_circ_g.2 AT1G11580_circ_g.3 AT1G11580_circ_g.4 AT1G11580_circ_g.5 AT1G11650_circ_g.1 AT1G11660_circ_g.1 AT1G11660_circ_g.2 AT1G11670_circ_g.1 AT1G11680_circ_g.1 AT1G11720_circ_g.1 AT1G11720_circ_g.2 AT1G11750_circ_g.1 AT1G11750_circ_g.2 AT1G11750_circ_g.3 AT1G11750_circ_g.4 AT1G11750_circ_g.5 AT1G11780_circ_g.1 AT1G11790_circ_g.1 AT1G11790_circ_g.2 AT1G11840_circ_g.1 AT1G11840_circ_g.2 AT1G11840_circ_g.3 AT1G11840_circ_g.4 AT1G11840_circ_g.5 AT1G11850_circ_g.1 AT1G11850_circ_g.2 AT1G11850_circ_g.3 AT1G11860_circ_g.1 AT1G11860_circ_g.2 AT1G11860_circ_g.3 AT1G11860_circ_g.4 AT1G11860_circ_g.5 AT1G11870_circ_g.1 AT1G11880_circ_g.1 AT1G11880_circ_g.2 AT1G11880_circ_g.3 AT1G11880_circ_g.4 AT1G11890_circ_g.1 AT1G11890_circ_g.2 AT1G11890_circ_g.3 AT1G11890_circ_g.4 AT1G11910_circ_g.1 AT1G11910_circ_g.2 AT1G11910_circ_g.3 AT1G11910_circ_g.4 AT1G11910_circ_g.5 AT1G11910_circ_g.6 AT1G11910_circ_g.7 AT1G11910_circ_g.8 AT1G11910_circ_g.9 AT1G11910_circ_g.10 AT1G11910_circ_g.11 AT1G11910_circ_g.12 AT1G11930_circ_g.1 AT1G11950_circ_g.1 AT1G11960_circ_g.1 AT1G11960_circ_g.2 AT1G11960_circ_g.3 AT1G11960_circ_g.4 AT1G11960_circ_g.5 AT1G12000_circ_g.1 AT1G12000_circ_g.2 AT1G12000_circ_g.3 AT1G12000_circ_g.4 AT1G12000_circ_g.5 AT1G12000_circ_g.6 AT1G12000_circ_g.7 AT1G12000_circ_g.8 AT1G12050_circ_g.1 AT1G12050_circ_g.2 AT1G12080_circ_g.1 AT1G12080_circ_g.2 AT1G12080_circ_g.3 AT1G12080_circ_g.4 AT1G12080_circ_g.5 AT1G12080_circ_g.6 AT1G12080_circ_g.7 AT1G12080_circ_g.8 AT1G12080_circ_g.9 AT1G12080_circ_g.10 AT1G12090_circ_g.1 AT1G12090_circ_g.2 AT1G12090_circ_g.3 AT1G12090_circ_g.4 AT1G12090_circ_g.5 AT1G12110_circ_g.1 AT1G12110_circ_g.2 1_circ_ag.3 AT1G04927_circ_g.1 1_circ_ag.2 AT1G12200_circ_g.1 AT1G12220_circ_g.1 AT1G12230_circ_g.1 AT1G12230_circ_g.2 AT1G12230_circ_g.3 AT1G12230_circ_g.4 AT1G12240_circ_g.1 AT1G12240_circ_g.2 AT1G12240_circ_g.3 AT1G12270_circ_g.1 AT1G12270_circ_g.2 AT1G12270_circ_g.3 AT1G12270_circ_g.4 AT1G12270_circ_g.5 AT1G12290_circ_g.1 1_circ_igg.2 AT1G12290_circ_g.3 1_circ_igg.4 AT1G12310_circ_g.1 AT1G12310_circ_g.2 AT1G12330_circ_g.1 AT1G12330_circ_g.2 AT1G12330_circ_g.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G12350_circ_g.1 AT1G12350_circ_g.2 AT1G12350_circ_g.3 AT1G12360_circ_g.1 AT1G12360_circ_g.2 AT1G12360_circ_g.3 AT1G12360_circ_g.4 AT1G12360_circ_g.5 AT1G12360_circ_g.6 AT1G12360_circ_g.7 AT1G12380_circ_g.1
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCAGCTTTTCAATGTGCTCTATTGAGTCTTTACAAGAGTAGAGATGTTAAAGATTGGATCATC
GATGATAGATTTGTGATCGGTGTCATCGTATATGCTggagtgataggacaagcaatgtcgactg
tagcagcgacatggggaataaacagattaggagctgttttcgcatcagcaattatgccagtttc
tctcatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGTGATAGGACAAGCAATGTCGACTGTAGCAGCGACATGGGGAATAAACAGATTAGGAGCTG
TTTTCGCATCAGCAATTATGCCAGTTTCTCTCATATCGGCTACTCTATTCGATTTCCTTATCTT
ACACACTCCTTTATACCTCGGAAGGTGCTCTCTTCGATCATCTCTATGAAATTTTTTGTATAGC
TTTATAGATGTTAATGTATTAGGTTCATGCTCGTATTACTAATTACAATTTATTTTGTAACTTT
TGCTATACAGTGTGATTGGATCAGTAGGGACAATAATAGGTCTCTACGTGTTCTTGTGGGGTAA
GAACAAAGAAACGGAAGCAGACATAACTACATTGTCTTCTCGGATGAACAACGAAGATCAACGA
GTCTAGGTCGCCCATTTAATCAAATAATATTGTTGTCATAGAAAGATTCATATGGCTTCATTGT
CGTAAATTAGTATTTACTACTGAATACATTTACCGTAAAGACCAGTCATAAATATTTAGATTTA
AATTGTGCAAGCACACTCACGTTAAAGACCAGTCATAAATATTCAGATTCAAATTGTGCAAGCA
GTTTGTATAATTCATACTTTTCGTTTGCAGATTTATAATTTCGTAAAGAGATAACAAAACAGAT
TTGTTATAATATTCAAAACTAACCAATATAAAGCATATATGATATATCAAAACATTTCACAACA
GATCTGTTAAAAGAGCCTCGTAATATTGTTTTTAGTTTCAAAAGCTCTGTTTCTTGGATTATTT
TCGTGCTGATTTTAAATGTGTTGCGTTTTGAGTTTGTAGCCTGTTGCTAAAACAGTAAGAATTT
AAGGTCTAGAAAAAATAAAGACCAATTGTAATTAGTACTACTGTATATATATTATGCACTACTG
GAGTGAAAATGCCCCGTCCATTTTTTCTAAGCCTTACCTTAATCTAGAATAGCATCTGCTTTTT
GTCCCTACAAAGTTCGACGGACAAAATAAAGGAAGGCAAAATTTCGATACCCATATTGGGGAGA
AACAACTATATACTAATACAGTATAATTTTTTTCATTAACTTCTATATTGAAATGTATAACAAT
TATTATGTGCATTATAAATAACAAAAACGAGGTACTGCATGGATCCAGTGAAAGGACAGAGCGT
AAAAGGGATCGAATCCAAATTGGGAACAATAAAATGGAGAATTATTGAATGAGAGTTGCAAAAA
TCTCATATAATTATGATAACTTTTTCCCATCATATCGAATCAGAATTCAATATGACGTGGTCAT
CGTAGATGGGGAATTCAGTATAATACTTTAGTGTTTATGTGTCATTAGATTACACTAAGTATAG
ATTATACCGACACTGTTTTACTTCATTTGCATGACACGGGTGATAACGCCAATGTATTGGTGTC
TCATATAACGTATAGAATGGAAAGCTAAGGTATCGGTGTCTCATGGAACGTGTGATAAAAGCCA
ATGTATCGGTGTCTCATGCATTTCTACTAAATATAAAAGTAAAAATAATACAGTAAAGGCAATC
GTCATGTATATATCGCAACACTGACCTGAAAAATAAATAAAAAATATTTTACCGCAGTAATTAT
ATTTGCGACAACTTCTTAAACTTAAAGCTAACGATTTAATCCATTACTCAATAAGAATATGCTC
GGGTTTGTGCTTTGTTCCCTCCTCACAAACACTTATCTTATATAAAATAAAGTTTATTTTTTAG
ATTAGTCTTAACCAGAACAACAAAAAAATATATACAAATTAATTAGCTAGTTGTGTGGGTGGGA
ACATTCAAACTATTTAAATATTTTGACAAAAAAAAATTTTATTATTTTTTTTTACTTTTCACAC
ATAATGCGGAACAAGATTCTAATATTATTTAAAATGAACTCGAGTAGACACCACTAAGTTTTTT
TGTAAAAAATGTTTTTGATAGAAAGACAACTAAGTTAATACAACAATTCTTCAACTCAGGGTCT
TTTCTATTAGAATTAGAGAACCCATACACACATGTTTCTTATATATATAGAGGAAGGTTTGTGG
TTGCCAAACTCAAAGCACATTGGGTTTCAATTCTTTTTAACGCACATACACCAAATGACATAGA
AAGAAAGAGAGGACGAGAGAGGGATGGGTGAGGATATGCGAGTAGTGAAAGTAGAATCAAAATG
GCCACCGATAATAGTAATGGTAATATCACAAGTAGCAATGGGTTCGGTGAATGCACTTGTGAAG
AAAGCTCTTGATGTTGGTGTGAACCATATGATCATTGGTGCTTATCGAATTGCTATTTCCTCTT
TCATTCTGGCTCCTATCGCCTATATTTTGGAAAGGTTTGATTTTTTTGATGAAATAGTAAGTTA
TTTACTTTTTTGGCGAATATTGTGAGAATGCTCTACTTTAACATGAAATAAATATAAACTAGTA
TTTGTTACTAATATATGAAGTTTAATTATTGACATTTTTTCCTAAAATTTACGTCTTATTGTTA
ACAGGGAAATAATACCGGAAATAACGTTTAGGCTAATGGTCGATCATTTCATCAGTGGATTGCT
CGGGTTTGTCTTCTCAACTCAACATAATATTTGATTATGTTCTTTTGTCGTCCATTTTCAATTT
CCTTTCCACATAGGAATTATTTTCTCTCAAGTAGCATAAAATTCATCATAAGCTTTTTTTTTTT
TTTTAATTCTAGCTTAGTTTTGGGTTTAAATTTGCAGGGCGAGTTTGATGCAATTTTTCTATTT
GCTTGGTCTGTCTTACACGTCAGCAACTGTTGCGTGTGCTTTGGTAAGCTTGATGCCTGCAATC
ACCTTTGCTTTCGCTCTTATTTTGAGGTAATTATGGAACCATCTAACTTCTTTATCATTAAAAT
AAGTACTGTATTTACTATTACTATGCAATGGGTTCATGCAGGATTTATTCGTATTTGTTATGTA
TACAGTGCATATAATTTCTTTTGTTTTTTCATCAAGCATATTATACTTCTATATATAGAAATAC
TCAAAAGAACCTTACTCATAAATTATCTATATAATGGGTCCGTGTAATTACTATCTTATGCATA
CAATATATACACATATAAAATTTCTTTAATTTTTTCATCAAAGATAATACTTTTATAGTAATAC
TCAACAGCATCTTACATATTTTTCATGTTTAATATTTGGAATGAGCCAAATAGGCCTTGGATAC
TATAAATATATTTATAGCATCCACACGTAAATTATTGGATTTAAGTCGATTTAAACTCCTATTT
TCTCCTGTTTTTTTTTTTTTGTTTTGTAACGTAAGGACAAAAACATTTACTGTGTTAAATTATC
ATATAAAATTACATATCTTTTCAGGACTGAAAAGATAAAAAGTCTAAGAACCCAAGCAGGAATG
ATAAAAGTGATGGGAACTATTATATGTATAAGTGGAGCTTTGTTCTTAACATTTTACAAAGGCC
CTCATATATCAAACTCTCACTCTCACCAAGAGGCTCTTCCTCACAACAACAACAGCGATCACAA
CACAAAGAATTGGCTTCTTGGATGTCTCTACTTAACCATAGGAACCGTGTTGATATCTCTATGG
ATTTTGTTTCAAGGGACTTTAAGCATCAAGTACCCTTGCAAATTCTCAAGCACTTGTCTCATGT
CAATTTTCGCAGCTTTTCAATGTGCTCTATTGAGTCTTTACAAGAGTAGAGATGTTAAAGATTG
GATCATCGATGATAGATTTGTGATCGGTGTCATCGTATATGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.295483609
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017