Detail information of 1_circ_ag.6


General Information
CircRNA Name 1_circ_ag.6
ID in PlantcircBase ath_circ_002108
Alias NA
Organism Arabidpsis thaliana
Position chr1: 3854342-3857711  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G11400_circ_g.1 AT1G11400_circ_g.2 AT1G11400_circ_g.3 AT1G11400_circ_g.4 AT1G11430_circ_g.1 1_circ_ag.2 AT1G11430_circ_g.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.7 1_circ_ag.8 AT1G11480_circ_g.1 AT1G11545_circ_g.1 AT1G11580_circ_g.1 AT1G11580_circ_g.2 AT1G11580_circ_g.3 AT1G11580_circ_g.4 AT1G11580_circ_g.5 AT1G11650_circ_g.1 AT1G11660_circ_g.1 AT1G11660_circ_g.2 AT1G11670_circ_g.1 AT1G11680_circ_g.1 AT1G11720_circ_g.1 AT1G11720_circ_g.2 AT1G11750_circ_g.1 AT1G11750_circ_g.2 AT1G11750_circ_g.3 AT1G11750_circ_g.4 AT1G11750_circ_g.5 AT1G11780_circ_g.1 AT1G11790_circ_g.1 AT1G11790_circ_g.2 AT1G11840_circ_g.1 AT1G11840_circ_g.2 AT1G11840_circ_g.3 AT1G11840_circ_g.4 AT1G11840_circ_g.5 AT1G11850_circ_g.1 AT1G11850_circ_g.2 AT1G11850_circ_g.3 AT1G11860_circ_g.1 AT1G11860_circ_g.2 AT1G11860_circ_g.3 AT1G11860_circ_g.4 AT1G11860_circ_g.5 AT1G11870_circ_g.1 AT1G11880_circ_g.1 AT1G11880_circ_g.2 AT1G11880_circ_g.3 AT1G11880_circ_g.4 AT1G11890_circ_g.1 AT1G11890_circ_g.2 AT1G11890_circ_g.3 AT1G11890_circ_g.4 AT1G11910_circ_g.1 AT1G11910_circ_g.2 AT1G11910_circ_g.3 AT1G11910_circ_g.4 AT1G11910_circ_g.5 AT1G11910_circ_g.6 AT1G11910_circ_g.7 AT1G11910_circ_g.8 AT1G11910_circ_g.9 AT1G11910_circ_g.10 AT1G11910_circ_g.11 AT1G11910_circ_g.12 AT1G11930_circ_g.1 AT1G11950_circ_g.1 AT1G11960_circ_g.1 AT1G11960_circ_g.2 AT1G11960_circ_g.3 AT1G11960_circ_g.4 AT1G11960_circ_g.5 AT1G12000_circ_g.1 AT1G12000_circ_g.2 AT1G12000_circ_g.3 AT1G12000_circ_g.4 AT1G12000_circ_g.5 AT1G12000_circ_g.6 AT1G12000_circ_g.7 AT1G12000_circ_g.8 AT1G12050_circ_g.1 AT1G12050_circ_g.2 AT1G12080_circ_g.1 AT1G12080_circ_g.2 AT1G12080_circ_g.3 AT1G12080_circ_g.4 AT1G12080_circ_g.5 AT1G12080_circ_g.6 AT1G12080_circ_g.7 AT1G12080_circ_g.8 AT1G12080_circ_g.9 AT1G12080_circ_g.10 AT1G12090_circ_g.1 AT1G12090_circ_g.2 AT1G12090_circ_g.3 AT1G12090_circ_g.4 AT1G12090_circ_g.5 AT1G12110_circ_g.1 AT1G12110_circ_g.2 1_circ_ag.3 AT1G04927_circ_g.1 1_circ_ag.2 AT1G12200_circ_g.1 AT1G12220_circ_g.1 AT1G12230_circ_g.1 AT1G12230_circ_g.2 AT1G12230_circ_g.3 AT1G12230_circ_g.4 AT1G12240_circ_g.1 AT1G12240_circ_g.2 AT1G12240_circ_g.3 AT1G12270_circ_g.1 AT1G12270_circ_g.2 AT1G12270_circ_g.3 AT1G12270_circ_g.4 AT1G12270_circ_g.5 AT1G12290_circ_g.1 1_circ_igg.2 AT1G12290_circ_g.3 1_circ_igg.4 AT1G12310_circ_g.1 AT1G12310_circ_g.2 AT1G12330_circ_g.1 AT1G12330_circ_g.2 AT1G12330_circ_g.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G12350_circ_g.1 AT1G12350_circ_g.2 AT1G12350_circ_g.3 AT1G12360_circ_g.1 AT1G12360_circ_g.2 AT1G12360_circ_g.3 AT1G12360_circ_g.4 AT1G12360_circ_g.5 AT1G12360_circ_g.6 AT1G12360_circ_g.7 AT1G12380_circ_g.1
Support reads 51
Tissues root, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTCTATTTGCTTGGTCTGTCTTACACGTCAGCAACTGTTGCGTGTGCTTTGGTAAGCTTGAT
GCCTGCAATCACCTTTGCTTTCGCTCTTATTTTGAGaactgagaagataaaagatctaaagacc
caagcaggaatgataaaagtgatgggaactctaatatgtataagtggagctttgttcttaacat
tttacaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACTGAGAAGATAAAAGATCTAAAGACCCAAGCAGGAATGATAAAAGTGATGGGAACTCTAATA
TGTATAAGTGGAGCTTTGTTCTTAACATTTTACAAAGGCCCTCATATATCAAACTCTCACTCTC
ACCTAGAGGCTCTTCCTCACAACAACAGCGATCACAACACCAAGAATTGGCTTCTTGGATGTCT
CTACTTAGTCATAGGAATCGTGTTGCTATCTCTATGGATATTGTTTCAAGGGACTTTAAGCATC
AAGTATCCTTGCAAATTCTCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCAATGTGCTC
TATTGAGTCTTTACAAGAGTAGAGACCTTAAACATTGGATCATCGACGATGGATTTGTGATTGG
TGTCATAATATATGCTGTAAGTTATAATACTATATTATCAGAAATCTTAACATTTTTATAAATT
ATAATGTAGTATATATGTAAATAATTAAATAAATTTTGGGGTTTACCTAATATTACCTTATTAC
TATACACGTATTATAGGGAGTGATAGGACAAGCAATGTCGACTGTAGCAGCGACATGGGGAATA
AACAGATTAGGAGCTGTTTTCGCATCAGCAATTATGCCAGTTTCTCTCATATCGGCTACTCTAT
TCGATTTCCTTATCTTACACACTCCTTTATACCTCGGAAGGTGCTCTCTTCGATCATCTCTATG
AAATTTTTTGTATAGCTTTATAGATGTTAATGTATTAGGTTCATGCTCGTATTACTAATTACAA
TTTATTTTGTAACTTTTGCTATACAGTGTGATTGGATCAGTAGGGACAATAATAGGTCTCTACG
TGTTCTTGTGGGGTAAGAACAAAGAAACGGAAGCAGACATAACTACATTGTCTTCTCGGATGAA
CAACGAAGATCAACGAGTCTAGGTCGCCCATTTAATCAAATAATATTGTTGTCATAGAAAGATT
CATATGGCTTCATTGTCGTAAATTAGTATTTACTACTGAATACATTTACCGTAAAGACCAGTCA
TAAATATTTAGATTTAAATTGTGCAAGCACACTCACGTTAAAGACCAGTCATAAATATTCAGAT
TCAAATTGTGCAAGCAGTTTGTATAATTCATACTTTTCGTTTGCAGATTTATAATTTCGTAAAG
AGATAACAAAACAGATTTGTTATAATATTCAAAACTAACCAATATAAAGCATATATGATATATC
AAAACATTTCACAACAGATCTGTTAAAAGAGCCTCGTAATATTGTTTTTAGTTTCAAAAGCTCT
GTTTCTTGGATTATTTTCGTGCTGATTTTAAATGTGTTGCGTTTTGAGTTTGTAGCCTGTTGCT
AAAACAGTAAGAATTTAAGGTCTAGAAAAAATAAAGACCAATTGTAATTAGTACTACTGTATAT
ATATTATGCACTACTGGAGTGAAAATGCCCCGTCCATTTTTTCTAAGCCTTACCTTAATCTAGA
ATAGCATCTGCTTTTTGTCCCTACAAAGTTCGACGGACAAAATAAAGGAAGGCAAAATTTCGAT
ACCCATATTGGGGAGAAACAACTATATACTAATACAGTATAATTTTTTTCATTAACTTCTATAT
TGAAATGTATAACAATTATTATGTGCATTATAAATAACAAAAACGAGGTACTGCATGGATCCAG
TGAAAGGACAGAGCGTAAAAGGGATCGAATCCAAATTGGGAACAATAAAATGGAGAATTATTGA
ATGAGAGTTGCAAAAATCTCATATAATTATGATAACTTTTTCCCATCATATCGAATCAGAATTC
AATATGACGTGGTCATCGTAGATGGGGAATTCAGTATAATACTTTAGTGTTTATGTGTCATTAG
ATTACACTAAGTATAGATTATACCGACACTGTTTTACTTCATTTGCATGACACGGGTGATAACG
CCAATGTATTGGTGTCTCATATAACGTATAGAATGGAAAGCTAAGGTATCGGTGTCTCATGGAA
CGTGTGATAAAAGCCAATGTATCGGTGTCTCATGCATTTCTACTAAATATAAAAGTAAAAATAA
TACAGTAAAGGCAATCGTCATGTATATATCGCAACACTGACCTGAAAAATAAATAAAAAATATT
TTACCGCAGTAATTATATTTGCGACAACTTCTTAAACTTAAAGCTAACGATTTAATCCATTACT
CAATAAGAATATGCTCGGGTTTGTGCTTTGTTCCCTCCTCACAAACACTTATCTTATATAAAAT
AAAGTTTATTTTTTAGATTAGTCTTAACCAGAACAACAAAAAAATATATACAAATTAATTAGCT
AGTTGTGTGGGTGGGAACATTCAAACTATTTAAATATTTTGACAAAAAAAAATTTTATTATTTT
TTTTTACTTTTCACACATAATGCGGAACAAGATTCTAATATTATTTAAAATGAACTCGAGTAGA
CACCACTAAGTTTTTTTGTAAAAAATGTTTTTGATAGAAAGACAACTAAGTTAATACAACAATT
CTTCAACTCAGGGTCTTTTCTATTAGAATTAGAGAACCCATACACACATGTTTCTTATATATAT
AGAGGAAGGTTTGTGGTTGCCAAACTCAAAGCACATTGGGTTTCAATTCTTTTTAACGCACATA
CACCAAATGACATAGAAAGAAAGAGAGGACGAGAGAGGGATGGGTGAGGATATGCGAGTAGTGA
AAGTAGAATCAAAATGGCCACCGATAATAGTAATGGTAATATCACAAGTAGCAATGGGTTCGGT
GAATGCACTTGTGAAGAAAGCTCTTGATGTTGGTGTGAACCATATGATCATTGGTGCTTATCGA
ATTGCTATTTCCTCTTTCATTCTGGCTCCTATCGCCTATATTTTGGAAAGGTTTGATTTTTTTG
ATGAAATAGTAAGTTATTTACTTTTTTGGCGAATATTGTGAGAATGCTCTACTTTAACATGAAA
TAAATATAAACTAGTATTTGTTACTAATATATGAAGTTTAATTATTGACATTTTTTCCTAAAAT
TTACGTCTTATTGTTAACAGGGAAATAATACCGGAAATAACGTTTAGGCTAATGGTCGATCATT
TCATCAGTGGATTGCTCGGGTTTGTCTTCTCAACTCAACATAATATTTGATTATGTTCTTTTGT
CGTCCATTTTCAATTTCCTTTCCACATAGGAATTATTTTCTCTCAAGTAGCATAAAATTCATCA
TAAGCTTTTTTTTTTTTTTTAATTCTAGCTTAGTTTTGGGTTTAAATTTGCAGGGCGAGTTTGA
TGCAATTTTTCTATTTGCTTGGTCTGTCTTACACGTCAGCAACTGTTGCGTGTGCTTTGGTAAG
CTTGATGCCTGCAATCACCTTTGCTTTCGCTCTTATTTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.573103314
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017