Detail information of 1_circ_ag.5


General Information
CircRNA Name 1_circ_ag.5
ID in PlantcircBase ath_circ_002107
Alias NA
Organism Arabidpsis thaliana
Position chr1: 3853995-3857432  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G11400_circ_g.1 AT1G11400_circ_g.2 AT1G11400_circ_g.3 AT1G11400_circ_g.4 AT1G11430_circ_g.1 1_circ_ag.2 AT1G11430_circ_g.3 1_circ_ag.4 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G11480_circ_g.1 AT1G11545_circ_g.1 AT1G11580_circ_g.1 AT1G11580_circ_g.2 AT1G11580_circ_g.3 AT1G11580_circ_g.4 AT1G11580_circ_g.5 AT1G11650_circ_g.1 AT1G11660_circ_g.1 AT1G11660_circ_g.2 AT1G11670_circ_g.1 AT1G11680_circ_g.1 AT1G11720_circ_g.1 AT1G11720_circ_g.2 AT1G11750_circ_g.1 AT1G11750_circ_g.2 AT1G11750_circ_g.3 AT1G11750_circ_g.4 AT1G11750_circ_g.5 AT1G11780_circ_g.1 AT1G11790_circ_g.1 AT1G11790_circ_g.2 AT1G11840_circ_g.1 AT1G11840_circ_g.2 AT1G11840_circ_g.3 AT1G11840_circ_g.4 AT1G11840_circ_g.5 AT1G11850_circ_g.1 AT1G11850_circ_g.2 AT1G11850_circ_g.3 AT1G11860_circ_g.1 AT1G11860_circ_g.2 AT1G11860_circ_g.3 AT1G11860_circ_g.4 AT1G11860_circ_g.5 AT1G11870_circ_g.1 AT1G11880_circ_g.1 AT1G11880_circ_g.2 AT1G11880_circ_g.3 AT1G11880_circ_g.4 AT1G11890_circ_g.1 AT1G11890_circ_g.2 AT1G11890_circ_g.3 AT1G11890_circ_g.4 AT1G11910_circ_g.1 AT1G11910_circ_g.2 AT1G11910_circ_g.3 AT1G11910_circ_g.4 AT1G11910_circ_g.5 AT1G11910_circ_g.6 AT1G11910_circ_g.7 AT1G11910_circ_g.8 AT1G11910_circ_g.9 AT1G11910_circ_g.10 AT1G11910_circ_g.11 AT1G11910_circ_g.12 AT1G11930_circ_g.1 AT1G11950_circ_g.1 AT1G11960_circ_g.1 AT1G11960_circ_g.2 AT1G11960_circ_g.3 AT1G11960_circ_g.4 AT1G11960_circ_g.5 AT1G12000_circ_g.1 AT1G12000_circ_g.2 AT1G12000_circ_g.3 AT1G12000_circ_g.4 AT1G12000_circ_g.5 AT1G12000_circ_g.6 AT1G12000_circ_g.7 AT1G12000_circ_g.8 AT1G12050_circ_g.1 AT1G12050_circ_g.2 AT1G12080_circ_g.1 AT1G12080_circ_g.2 AT1G12080_circ_g.3 AT1G12080_circ_g.4 AT1G12080_circ_g.5 AT1G12080_circ_g.6 AT1G12080_circ_g.7 AT1G12080_circ_g.8 AT1G12080_circ_g.9 AT1G12080_circ_g.10 AT1G12090_circ_g.1 AT1G12090_circ_g.2 AT1G12090_circ_g.3 AT1G12090_circ_g.4 AT1G12090_circ_g.5 AT1G12110_circ_g.1 AT1G12110_circ_g.2 1_circ_ag.3 AT1G04927_circ_g.1 1_circ_ag.2 AT1G12200_circ_g.1 AT1G12220_circ_g.1 AT1G12230_circ_g.1 AT1G12230_circ_g.2 AT1G12230_circ_g.3 AT1G12230_circ_g.4 AT1G12240_circ_g.1 AT1G12240_circ_g.2 AT1G12240_circ_g.3 AT1G12270_circ_g.1 AT1G12270_circ_g.2 AT1G12270_circ_g.3 AT1G12270_circ_g.4 AT1G12270_circ_g.5 AT1G12290_circ_g.1 1_circ_igg.2 AT1G12290_circ_g.3 1_circ_igg.4 AT1G12310_circ_g.1 AT1G12310_circ_g.2 AT1G12330_circ_g.1 AT1G12330_circ_g.2 AT1G12330_circ_g.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G12350_circ_g.1 AT1G12350_circ_g.2 AT1G12350_circ_g.3 AT1G12360_circ_g.1 AT1G12360_circ_g.2 AT1G12360_circ_g.3 AT1G12360_circ_g.4 AT1G12360_circ_g.5 AT1G12360_circ_g.6 AT1G12360_circ_g.7 AT1G12380_circ_g.1
Support reads 18
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATTTTTTCCTAAAATTTACGTCTTATTGTTAACAGGGAAATAATACCGGAAATAACGTTTAG
GCTAATGGTCGATCATTTCATCAGTGGATTGCTCGGggcgagtttgatgcaatttttctatttg
cttggtctgtcctacacgtcagcaactgttgcgtgtgctttggtaagcttgatgcctgcaatca
cctttgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCGAGTTTGATGCAATTTTTCTATTTGCTTGGTCTGTCCTACACGTCAGCAACTGTTGCGTGT
GCTTTGGTAAGCTTGATGCCTGCAATCACCTTTGCTTTCGCTCTTATTTTGAGGTAATTATGGA
ACCATCTAACTTCTTTATCATTAAAATAAGTACTGTATTTACTATTACTATGCAATGGGTTCAT
GCAGGATTTATTCGTATTTGTTATGTATACAGTGCATATAATTTCTTTTGTTTTTTCATCAAGC
ATATTATACTTCTATATATAGAAATACTCAAAAGAACCTTACTCATAAATTATCTCAAATTTAT
CATCTAAAAGGTTATATTACTTTTCAGAACTGAGAAGATAAAAGATCTAAAGACCCAAGCAGGA
ATGATAAAAGTGATGGGAACTCTAATATGTATAAGTGGAGCTTTGTTCTTAACATTTTACAAAG
GCCCTCATATATCAAACTCTCACTCTCACCTAGAGGCTCTTCCTCACAACAACAGCGATCACAA
CACCAAGAATTGGCTTCTTGGATGTCTCTACTTAGTCATAGGAATCGTGTTGCTATCTCTATGG
ATATTGTTTCAAGGGACTTTAAGCATCAAGTATCCTTGCAAATTCTCAAGCACTTGTCTCATGT
CAATTTTCGCAGCTTTTCAATGTGCTCTATTGAGTCTTTACAAGAGTAGAGACCTTAAACATTG
GATCATCGACGATGGATTTGTGATTGGTGTCATAATATATGCTGTAAGTTATAATACTATATTA
TCAGAAATCTTAACATTTTTATAAATTATAATGTAGTATATATGTAAATAATTAAATAAATTTT
GGGGTTTACCTAATATTACCTTATTACTATACACGTATTATAGGGAGTGATAGGACAAGCAATG
TCGACTGTAGCAGCGACATGGGGAATAAACAGATTAGGAGCTGTTTTCGCATCAGCAATTATGC
CAGTTTCTCTCATATCGGCTACTCTATTCGATTTCCTTATCTTACACACTCCTTTATACCTCGG
AAGGTGCTCTCTTCGATCATCTCTATGAAATTTTTTGTATAGCTTTATAGATGTTAATGTATTA
GGTTCATGCTCGTATTACTAATTACAATTTATTTTGTAACTTTTGCTATACAGTGTGATTGGAT
CAGTAGGGACAATAATAGGTCTCTACGTGTTCTTGTGGGGTAAGAACAAAGAAACGGAAGCAGA
CATAACTACATTGTCTTCTCGGATGAACAACGAAGATCAACGAGTCTAGGTCGCCCATTTAATC
AAATAATATTGTTGTCATAGAAAGATTCATATGGCTTCATTGTCGTAAATTAGTATTTACTACT
GAATACATTTACCGTAAAGACCAGTCATAAATATTTAGATTTAAATTGTGCAAGCACACTCACG
TTAAAGACCAGTCATAAATATTCAGATTCAAATTGTGCAAGCAGTTTGTATAATTCATACTTTT
CGTTTGCAGATTTATAATTTCGTAAAGAGATAACAAAACAGATTTGTTATAATATTCAAAACTA
ACCAATATAAAGCATATATGATATATCAAAACATTTCACAACAGATCTGTTAAAAGAGCCTCGT
AATATTGTTTTTAGTTTCAAAAGCTCTGTTTCTTGGATTATTTTCGTGCTGATTTTAAATGTGT
TGCGTTTTGAGTTTGTAGCCTGTTGCTAAAACAGTAAGAATTTAAGGTCTAGAAAAAATAAAGA
CCAATTGTAATTAGTACTACTGTATATATATTATGCACTACTGGAGTGAAAATGCCCCGTCCAT
TTTTTCTAAGCCTTACCTTAATCTAGAATAGCATCTGCTTTTTGTCCCTACAAAGTTCGACGGA
CAAAATAAAGGAAGGCAAAATTTCGATACCCATATTGGGGAGAAACAACTATATACTAATACAG
TATAATTTTTTTCATTAACTTCTATATTGAAATGTATAACAATTATTATGTGCATTATAAATAA
CAAAAACGAGGTACTGCATGGATCCAGTGAAAGGACAGAGCGTAAAAGGGATCGAATCCAAATT
GGGAACAATAAAATGGAGAATTATTGAATGAGAGTTGCAAAAATCTCATATAATTATGATAACT
TTTTCCCATCATATCGAATCAGAATTCAATATGACGTGGTCATCGTAGATGGGGAATTCAGTAT
AATACTTTAGTGTTTATGTGTCATTAGATTACACTAAGTATAGATTATACCGACACTGTTTTAC
TTCATTTGCATGACACGGGTGATAACGCCAATGTATTGGTGTCTCATATAACGTATAGAATGGA
AAGCTAAGGTATCGGTGTCTCATGGAACGTGTGATAAAAGCCAATGTATCGGTGTCTCATGCAT
TTCTACTAAATATAAAAGTAAAAATAATACAGTAAAGGCAATCGTCATGTATATATCGCAACAC
TGACCTGAAAAATAAATAAAAAATATTTTACCGCAGTAATTATATTTGCGACAACTTCTTAAAC
TTAAAGCTAACGATTTAATCCATTACTCAATAAGAATATGCTCGGGTTTGTGCTTTGTTCCCTC
CTCACAAACACTTATCTTATATAAAATAAAGTTTATTTTTTAGATTAGTCTTAACCAGAACAAC
AAAAAAATATATACAAATTAATTAGCTAGTTGTGTGGGTGGGAACATTCAAACTATTTAAATAT
TTTGACAAAAAAAAATTTTATTATTTTTTTTTACTTTTCACACATAATGCGGAACAAGATTCTA
ATATTATTTAAAATGAACTCGAGTAGACACCACTAAGTTTTTTTGTAAAAAATGTTTTTGATAG
AAAGACAACTAAGTTAATACAACAATTCTTCAACTCAGGGTCTTTTCTATTAGAATTAGAGAAC
CCATACACACATGTTTCTTATATATATAGAGGAAGGTTTGTGGTTGCCAAACTCAAAGCACATT
GGGTTTCAATTCTTTTTAACGCACATACACCAAATGACATAGAAAGAAAGAGAGGACGAGAGAG
GGATGGGTGAGGATATGCGAGTAGTGAAAGTAGAATCAAAATGGCCACCGATAATAGTAATGGT
AATATCACAAGTAGCAATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTTGGTGTG
AACCATATGATCATTGGTGCTTATCGAATTGCTATTTCCTCTTTCATTCTGGCTCCTATCGCCT
ATATTTTGGAAAGGTTTGATTTTTTTGATGAAATAGTAAGTTATTTACTTTTTTGGCGAATATT
GTGAGAATGCTCTACTTTAACATGAAATAAATATAAACTAGTATTTGTTACTAATATATGAAGT
TTAATTATTGACATTTTTTCCTAAAATTTACGTCTTATTGTTAACAGGGAAATAATACCGGAAA
TAACGTTTAGGCTAATGGTCGATCATTTCATCAGTGGATTGCTCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.469599988
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017