Detail information of Os05g0317200_circ_g.3


General Information
CircRNA Name Os05g0317200_circ_g.3
ID in PlantcircBase osa_circ_027413
Alias Os_ciR3053
Organism Oryza sativa
Position chr5: 14692709-14697245  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os05g0317200
Parent gene annotation AMP-dependent synthetase and ligase domain containing protein. (
Os05t0317200-01)
Parent gene strand +
Alternative splicing Os05g0317200_circ_g.1 Os05g0317200_circ_g.2 Os05g0317200_circ_g.4 Os05g0317200_circ_g.5 Os05g0317200_circ_g.6 Os05g0317200_circ_g.7 Os05g0317200_circ_g.8 Os05g0317200_circ_g.9 Os05g0317200_circ_g.10 Os05g0317200_circ_g.11
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0317200-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGC
CGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGaaaccatactaggaagcagcggagcaag
acggtttgccaagatctttgaaaccaacatcgcaaaactgtgaatgaggcttatggagcgaaaa
tctttaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAACCATACTAGGAAGCAGCGGAGCAAGACGGTTTGCCAAGATCTTTGAAACCAACATCGCAAA
ACTGTGAATGAGGCTTATGGAGCGAAAATCTTTAACTCTACAAGCATCCACCTGTTTTGGTAAG
AGAGTTATAAAGGCAGAGTTCAACTTCTTGAATTTTGACACATGTCCATGCTGAATTGCCGTTA
GTAGATGGTTACACTTTAGAAGAGTTAAATGACAGCAACCATTAGTAGATGGGAAACTCATTTT
TTTTGTGTGTTATAAATTTCAGACACAGGTTTCAACTCTGATATGTGATTCAAAGCAACTTAAG
AAGCTACCTGCAATCAGTTCCAAGTTGCAGAGTGTTAAGCATGTTATCTATATTGAGGATGAAC
CTGTTGAGGCTGAGGTACTCAATCAAATGAAGCACTGGACAACATTTTCTTTTGGTGAAGTTGA
AGAATTGGGTAAAACATCACATACAGATGCAAGATTACCTTCAAGCACTGATACTGCAGTTATT
ATGTATACAAGTGGAAGTACGGGTCTTCCCAAGGTACACTTGTGCTCAAAGATATTCTGATTTT
TTCTGTCATATGCTGTTATCTATTTTTATTCATGAAAATAAATAAGGACAAAAGCAGGGGTCAT
TCTTTCTTGTTCCTCCTTTTCTTTTTGCTTCATCTGAAGGTGTACACACATGATGAGCCTACCA
TCCTGTTACTTTCACTGAACAAGAGCTTAAGTGATGTATGATATAGAGAATTACGATCCTATTA
GCCCATTAGCTTGACAGATATTATGATAATCTCTTGGGCCTATTCTCAACGTACTCACATAACT
TCCTTTTGAACTGATGCTCTCCATAATTAAGGGCAACATTGAGAGTTATGATAATATGCAGTTA
TGCCCATTTAATTTACAAATGAGAAATAAAGCAGGACATTAAATCCTTTCTACAAATTAAATTC
ACTTTCCTGATATATACTCTCTTTTCCTCTCTTCCCCAAAGGAAAGTTGGTTTTTCCTTGGTAT
TTTTGCAAGTGCAATTACCCACTTTGCTTATTGTGGAAGGATAGCAGGGATGGGAACAGGATGA
ACCAAACTGATCCATCACTGCTTCATCCACTCCTCACCATCATGTAGAGATCCATGGACTGTTC
CAATGTACAATTAAGACCCTCTATAACCACTGGATCTCTAGGTTGACTCTAGTATTCAGAGAAA
AAAAAAAATAAATTCAGAAACCATATGCATTTTGATACGCGAAAAAGGCTCAAATTTGAAATTC
ATAACGAGAACATCATTTTGCACAAACAACTCAAAATTCCTCGGATTAGGAAAAACAGGTATAG
ATAAAATATATGAATTAACTGTTCATGAGTGTGACAACGTTCGTCTTTTTGACAAAATGATCAG
CATAATGCATATTTTTTTGTGCAAACTTGAATTACAATCCATTGTGGATCCACAGCTATGTACT
TTCATTTATCACAATGTCAACCACTTTTGAGTTTGCAGTTCTTGTGTCCTCTTTTAATCCAGTT
TTATGGTTTCCTTTGACATAGGGTGTAATGATTACACATGGAAATATGGTGGCCACAACTGCAG
CTGTCATGACAATCATACCAAAACTTGGCACAGGGGATGTTTATCTGGCATACCTTCCGCTGGC
TCATGTCTTTGAACTAGCAGCAGAGGTGACATCTTTTGCAATTGAGAGAGATGCCATTATTAAG
AACTGTGAATATTTCTATGACATATTGTTGTTTTGTTTGGCCAGACTGTCATGTTAGCTTCTGG
TGCTGCCATTGGATATGGCTCAGCTCTGACTATGACAGATACATCAAATAAAATAAAGAAGGGG
ACAAAAGGAGATGTTTCTGCACTGAAGCCTACTCTTATGATTTCAGTCCCTGCAATTTTAGACC
GCATCAGAGATGCCGTGTTTAAAAAGGTTCAAGATTCTCCTCTCATACCATCTATCTCAGTAGT
TTACACCATTATCTTTCCATCTTTGACTAGTTCTGCAATCTTTTATATGCCATTTGCATTCAGC
TGCAACATGTCTTTAGAGTGCCTTTGATGCATTAATCATTTATATGTTTAAATATCTGCCTGTG
AATAAACTAAAGAAAAAAGTTTTGAACCATACAGGTCCTAATATTGTTTTATGTTAAGCGTTAT
CTGTATGGCCATGTACTTAATTTCCTTTTCGTTTTAGTAATGTTTGACTGTATTCGCACATGCC
ACATATACATTGGTCCATCTTGGACATTTTCATGTCAACTTCTAATTTTTAGAAGGCCAAATAA
GAACAAACAACATATGGGATATTGAGGTATTGTAATGTAAGGAAATGAAGGCAGCAATTCATAA
AAATTGCAGTGCAGAGTTGGTGAGTGGTGGATTCACAACCACCACAACCTTATTTTTAAAGGAG
TGCTACTGCTAGCAATGTGCCCACGTATTTCAATGGATGTACATGCCATATGGGATCAGCTAAA
ACCTAAATACTGCAAACAGTTTATATGTCACCACTTATACCTGACCACACAACTTGGTGGGGTA
TAGAAGAGCACACTATCACCCCCAATTCAGTATTTTTAAGGAATTAAGATTAGGATATAGATGC
ACTGTTTGGTTGTCGTTTGCACATCTAGCAGCCTAGCAACTTGTAGATTTTTCTGTACCTTACA
CCAGGCATATCTTAAAAAAAAAAATTGATGTTCTGGCTAGCTCAATGGGCAAAGTCAAGTGCAG
GCCCCAGCCATTTCTAGCATAGTATAACATGCATGTTTTTGGTATCATACAACACTACAACCTT
CAGTTTTGGTGCACTGCTCTGGTCTGCATCTCTTATTTCCCAACCCTAGCCATTATAATGCCTA
CCATACCGTAGCACGCTTCATGTCTTGTCTAGCATACAAGTCTGAGCTTCGGCTGAGGCTGATA
AGCCATAGAAAATGAAGCAACCGAAAATAATTTTTGGGTTAAACTGTTATACTCCCTCCGTTTT
TTAACATATGGCGCTGTTGACATTTTGAGATACATTTGACCATTCTTCTTATTAAAAAATATGT
AATTATCATTTATTTTATTATGATTTGATTTATTGTCAAATGTTCTTTAAGCATGGCTTAAATT
TTTTTATATTCGCTCTAAAATTTTGAATAGGACGAATGATCAAACGTTTATCAAAAAGTTAACG
GCATCATATATTAAAAATGGGAGGTACAAGGCTGGAGAATAGACTATGATGAGAAAACCCCAAA
TTCAACTCTAAAATTAAGTTTCAAATTCAAATTGGTTGTGGCTGATAAGCCAACAAGCAGATGA
TGAAACCGAAGGCTGGAAACATGTTTGAAACAATGAGTTTCTGTAGACTTAATATTTTAAATGC
ATTGCATCAAATGGCATGTATCATGCAGGCAGAATTGAACGGTCAAATTTTATGATCATGCACC
AAAATATGGTTTAAACATACTTCTCATCTCAAAACTTAATATTTAAATTATGTTTCCAGGTTGG
TGAGAAGGGTGGTCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAGCTATT
GAAGGAAGTTGGTTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTTTTAAAC
CAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGAG
TGACACACAAAGATTTATGAATATATGTCTTGGGTAATTTCTTTTGTCCTATTTGGATTATCTT
AAATTTAACCATTTGCAATCAGTGAGATGTCAACTGAAGAAGTATTCTTCCAAAAATTTCCACT
GAGTTTATTTGTTGAAGATTGTGTGCCAGTCGTAGAGCATAGTGTCATTTCTCGGATACTTGAA
TTATCTTTTTTTTCTTCGAAAAATGAGGCTAGAATTACATGAATTCCAAAAACATACAAGGAGT
CAACTTTTTTTTTTGTCTTATTGTACATCTTAAGTTTGTTTAAGACGTTACTAAAAAAAATACT
GATTTTAATGAACTTACCTCATGGAAAATTCAAGTTCAATGCCATACTCAAGTCCTAGACATTG
TTAGAGTGTACGTTTGCAGGTAGTGCGCTCATCAAACCTTTGGATTTATTTATTTACAGAAAAC
AAAACATTTGTTGGATAAGCTCATAAAATTTGGGCGTGCTACTTATATGTTTTTTTAATTCAAA
CAGTTTGTCAAAAATCACTTTATAGTGAAATTTGTATTTGCACGTTTAGTGAATCAAATGCTGA
AAGTTGAAATATTAAACAGAGGACCTTTCTAGAGTACATGCACTATGCTATAATGTGATGAGCT
TCCTTTTATTGTATGTCGCTGCATTTGTTTTTGGTTCTTATGCAGTTTTGAATTACCTGTGCTG
CAGTGTACCAGTAGGTCAAGGCTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAA
TGGGATGACACAAGTGTGGGCCGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAG
Conservation Information
Conserved circRNAs osi_circ_006151* osi_circ_015315 osi_circ_006152*
PMCS 0.211179454
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015