Detail information of Os05g0317200_circ_g.5


General Information
CircRNA Name Os05g0317200_circ_g.5
ID in PlantcircBase osa_circ_027415
Alias Os05circ07531
Organism Oryza sativa
Position chr5: 14694266-14697245  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os05g0317200
Parent gene annotation AMP-dependent synthetase and ligase domain containing protein. (
Os05t0317200-01)
Parent gene strand +
Alternative splicing Os05g0317200_circ_g.1 Os05g0317200_circ_g.2 Os05g0317200_circ_g.3 Os05g0317200_circ_g.4 Os05g0317200_circ_g.6 Os05g0317200_circ_g.7 Os05g0317200_circ_g.8 Os05g0317200_circ_g.9 Os05g0317200_circ_g.10 Os05g0317200_circ_g.11
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0317200-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGC
CGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGggtgtaatgattacacatggaaatatgg
tggccacaactgcagctgtcatgacaatcataccaaaacttggcacaggggatgtttatctggc
ataccttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 654
Transcript exons: 14694266-14694397,14694481-14694654,14696224-14696453,14
697128-14697245
GGTGTAATGATTACACATGGAAATATGGTGGCCACAACTGCAGCTGTCATGACAATCATACCAA
AACTTGGCACAGGGGATGTTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGC
AGAGACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTCAGCTCTGACTATGACAGAT
ACATCAAATAAAATAAAGAAGGGGACAAAAGGAGATGTTTCTGCACTGAAGCCTACTCTTATGA
TTTCAGTCCCTGCAATTTTAGACCGCATCAGAGATGCCGTGTTTAAAAAGGTTGGTGAGAAGGG
TGGTCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAGCTATTGAAGGAAGT
TGGTTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTTTTAAACCAATACGTT
CCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGAGTGACACACA
AAGATTTATGAATATATGTCTTGGTGTACCAGTAGGTCAAGGCTATGGATTGACAGAGACTTGT
GCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGCCGTGTTGGTCCACCCCTTCCTT
GTTGCTATGTCAAG

Genomic sequence GGTGTAATGATTACACATGGAAATATGGTGGCCACAACTGCAGCTGTCATGACAATCATACCAA
AACTTGGCACAGGGGATGTTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGC
AGAGGTGACATCTTTTGCAATTGAGAGAGATGCCATTATTAAGAACTGTGAATATTTCTATGAC
ATATTGTTGTTTTGTTTGGCCAGACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTC
AGCTCTGACTATGACAGATACATCAAATAAAATAAAGAAGGGGACAAAAGGAGATGTTTCTGCA
CTGAAGCCTACTCTTATGATTTCAGTCCCTGCAATTTTAGACCGCATCAGAGATGCCGTGTTTA
AAAAGGTTCAAGATTCTCCTCTCATACCATCTATCTCAGTAGTTTACACCATTATCTTTCCATC
TTTGACTAGTTCTGCAATCTTTTATATGCCATTTGCATTCAGCTGCAACATGTCTTTAGAGTGC
CTTTGATGCATTAATCATTTATATGTTTAAATATCTGCCTGTGAATAAACTAAAGAAAAAAGTT
TTGAACCATACAGGTCCTAATATTGTTTTATGTTAAGCGTTATCTGTATGGCCATGTACTTAAT
TTCCTTTTCGTTTTAGTAATGTTTGACTGTATTCGCACATGCCACATATACATTGGTCCATCTT
GGACATTTTCATGTCAACTTCTAATTTTTAGAAGGCCAAATAAGAACAAACAACATATGGGATA
TTGAGGTATTGTAATGTAAGGAAATGAAGGCAGCAATTCATAAAAATTGCAGTGCAGAGTTGGT
GAGTGGTGGATTCACAACCACCACAACCTTATTTTTAAAGGAGTGCTACTGCTAGCAATGTGCC
CACGTATTTCAATGGATGTACATGCCATATGGGATCAGCTAAAACCTAAATACTGCAAACAGTT
TATATGTCACCACTTATACCTGACCACACAACTTGGTGGGGTATAGAAGAGCACACTATCACCC
CCAATTCAGTATTTTTAAGGAATTAAGATTAGGATATAGATGCACTGTTTGGTTGTCGTTTGCA
CATCTAGCAGCCTAGCAACTTGTAGATTTTTCTGTACCTTACACCAGGCATATCTTAAAAAAAA
AAATTGATGTTCTGGCTAGCTCAATGGGCAAAGTCAAGTGCAGGCCCCAGCCATTTCTAGCATA
GTATAACATGCATGTTTTTGGTATCATACAACACTACAACCTTCAGTTTTGGTGCACTGCTCTG
GTCTGCATCTCTTATTTCCCAACCCTAGCCATTATAATGCCTACCATACCGTAGCACGCTTCAT
GTCTTGTCTAGCATACAAGTCTGAGCTTCGGCTGAGGCTGATAAGCCATAGAAAATGAAGCAAC
CGAAAATAATTTTTGGGTTAAACTGTTATACTCCCTCCGTTTTTTAACATATGGCGCTGTTGAC
ATTTTGAGATACATTTGACCATTCTTCTTATTAAAAAATATGTAATTATCATTTATTTTATTAT
GATTTGATTTATTGTCAAATGTTCTTTAAGCATGGCTTAAATTTTTTTATATTCGCTCTAAAAT
TTTGAATAGGACGAATGATCAAACGTTTATCAAAAAGTTAACGGCATCATATATTAAAAATGGG
AGGTACAAGGCTGGAGAATAGACTATGATGAGAAAACCCCAAATTCAACTCTAAAATTAAGTTT
CAAATTCAAATTGGTTGTGGCTGATAAGCCAACAAGCAGATGATGAAACCGAAGGCTGGAAACA
TGTTTGAAACAATGAGTTTCTGTAGACTTAATATTTTAAATGCATTGCATCAAATGGCATGTAT
CATGCAGGCAGAATTGAACGGTCAAATTTTATGATCATGCACCAAAATATGGTTTAAACATACT
TCTCATCTCAAAACTTAATATTTAAATTATGTTTCCAGGTTGGTGAGAAGGGTGGTCTGACCAA
AAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAGCTATTGAAGGAAGTTGGTTTGGATCC
TGGGCACCAGAGAGGATGATATGGGATAACCTCATTTTTAAACCAATACGTTCCATGCTTGGTG
GGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGAGTGACACACAAAGATTTATGAA
TATATGTCTTGGGTAATTTCTTTTGTCCTATTTGGATTATCTTAAATTTAACCATTTGCAATCA
GTGAGATGTCAACTGAAGAAGTATTCTTCCAAAAATTTCCACTGAGTTTATTTGTTGAAGATTG
TGTGCCAGTCGTAGAGCATAGTGTCATTTCTCGGATACTTGAATTATCTTTTTTTTCTTCGAAA
AATGAGGCTAGAATTACATGAATTCCAAAAACATACAAGGAGTCAACTTTTTTTTTTGTCTTAT
TGTACATCTTAAGTTTGTTTAAGACGTTACTAAAAAAAATACTGATTTTAATGAACTTACCTCA
TGGAAAATTCAAGTTCAATGCCATACTCAAGTCCTAGACATTGTTAGAGTGTACGTTTGCAGGT
AGTGCGCTCATCAAACCTTTGGATTTATTTATTTACAGAAAACAAAACATTTGTTGGATAAGCT
CATAAAATTTGGGCGTGCTACTTATATGTTTTTTTAATTCAAACAGTTTGTCAAAAATCACTTT
ATAGTGAAATTTGTATTTGCACGTTTAGTGAATCAAATGCTGAAAGTTGAAATATTAAACAGAG
GACCTTTCTAGAGTACATGCACTATGCTATAATGTGATGAGCTTCCTTTTATTGTATGTCGCTG
CATTTGTTTTTGGTTCTTATGCAGTTTTGAATTACCTGTGCTGCAGTGTACCAGTAGGTCAAGG
CTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGC
CGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAG
Conservation Information
Conserved circRNAs osi_circ_006154*
PMCS 0.330340048
Functional Information
Coding potential Y
Potential coding position 14694273-14697242(+)
14694378-14696415(-)
14694326-14697238(-)
Potential amino acid sequence MITHGNMVATTAAVMTIIPKLGTGDVYLAYLPLAHVFELAAETVMLASGAAIGYGSALTMTDTS
NKIKKGTKGDVSALKPTLMISVPAILDRIRDAVFKKVGEKGGLTKKLFDIAYKRNLGAIEGSWF
GSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGVPVGQGYGLTETCAG
AAFSEWDDTSVGRVGPPLPCCYVKGVMITHGNMVATTAAVMTIIPKLGTGDVYLAYLPLAHVFE
LAAETVMLASGAAIGYGSALTMTDTSNKIKKGTKGDVSALKPTLMISVPAILDRIRDAVFKKVG
EKGGLTKKLFDIAYKRNLGAIEGSWFGSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSS
DTQRFMNICLGVPVGQGYGLTETCAGAAFSEWDDTSVGRVGPPLPCCYVKGVMITHGNMVATTA
AVMTIIPKLGTGDVYLAYLPLAHVFELAAETVMLASGAAIGYGSALTMTDTSNKIKKGTKGDVS
ALKPTLMISVPAILDRIRDAVFKKVGEKGGLTKKLFDIAYKRNLGAIEGSWFGSWAPERMIWDN
LIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGVPVGQGYGLTETCAGAAFSEWDDTSVG
RVGPPLPCCYVKGVMITHGNMVATTAAVMTIIPKLGTGDVYLAYLPLAHVFELAAETVMLASGA
AIGYGSALTMTDTSNKIKKGTKGDVSALKPTLMISVPAILDRIRDAVFKKVGEKGGLTKKLFDI
AYKRNLGAIEGSWFGSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGV
PVGQGYGLTETCAGAAFSEWDDTSVGRVGPPLPCCYVK(+)
MSQRKVCQINIPCAKFWYDCHDSCSCGHHISMCNHYTLDIATRKGWTNTAHTCVIPFRKGCSST
SLCQSIALTYWYTKTYIHKSLCVTR*(-)
MIVMTAAVVATIFPCVIITPLT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015