Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os05g0317200_circ_g.5 |
ID in PlantcircBase | osa_circ_027415 |
Alias | Os05circ07531 |
Organism | Oryza sativa |
Position | chr5: 14694266-14697245 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | SMALT, Segemehl |
Parent gene | Os05g0317200 |
Parent gene annotation |
AMP-dependent synthetase and ligase domain containing protein. ( Os05t0317200-01) |
Parent gene strand | + |
Alternative splicing | Os05g0317200_circ_g.1 Os05g0317200_circ_g.2 Os05g0317200_circ_g.3 Os05g0317200_circ_g.4 Os05g0317200_circ_g.6 Os05g0317200_circ_g.7 Os05g0317200_circ_g.8 Os05g0317200_circ_g.9 Os05g0317200_circ_g.10 Os05g0317200_circ_g.11 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os05t0317200-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_006154* |
PMCS | 0.330340048 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
14694273-14697242(+) 14694378-14696415(-) 14694326-14697238(-) |
Potential amino acid sequence |
MITHGNMVATTAAVMTIIPKLGTGDVYLAYLPLAHVFELAAETVMLASGAAIGYGSALTMTDTS NKIKKGTKGDVSALKPTLMISVPAILDRIRDAVFKKVGEKGGLTKKLFDIAYKRNLGAIEGSWF GSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGVPVGQGYGLTETCAG AAFSEWDDTSVGRVGPPLPCCYVKGVMITHGNMVATTAAVMTIIPKLGTGDVYLAYLPLAHVFE LAAETVMLASGAAIGYGSALTMTDTSNKIKKGTKGDVSALKPTLMISVPAILDRIRDAVFKKVG EKGGLTKKLFDIAYKRNLGAIEGSWFGSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSS DTQRFMNICLGVPVGQGYGLTETCAGAAFSEWDDTSVGRVGPPLPCCYVKGVMITHGNMVATTA AVMTIIPKLGTGDVYLAYLPLAHVFELAAETVMLASGAAIGYGSALTMTDTSNKIKKGTKGDVS ALKPTLMISVPAILDRIRDAVFKKVGEKGGLTKKLFDIAYKRNLGAIEGSWFGSWAPERMIWDN LIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGVPVGQGYGLTETCAGAAFSEWDDTSVG RVGPPLPCCYVKGVMITHGNMVATTAAVMTIIPKLGTGDVYLAYLPLAHVFELAAETVMLASGA AIGYGSALTMTDTSNKIKKGTKGDVSALKPTLMISVPAILDRIRDAVFKKVGEKGGLTKKLFDI AYKRNLGAIEGSWFGSWAPERMIWDNLIFKPIRSMLGGRIRFVLCGGAPLSSDTQRFMNICLGV PVGQGYGLTETCAGAAFSEWDDTSVGRVGPPLPCCYVK(+) MSQRKVCQINIPCAKFWYDCHDSCSCGHHISMCNHYTLDIATRKGWTNTAHTCVIPFRKGCSST SLCQSIALTYWYTKTYIHKSLCVTR*(-) MIVMTAAVVATIFPCVIITPLT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015 |