Detail information of BGIOSGA019609_circ_g.2


General Information
CircRNA Name BGIOSGA019609_circ_g.2
ID in PlantcircBase osi_circ_006151
Alias 5:15637899|15642431
Organism Oryza sativa ssp. indica
Position chr5: 15637899-15642431  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA019609
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019609_circ_g.1 BGIOSGA019609_circ_g.3 BGIOSGA019609_circ_g.4 BGIOSGA019609_circ_g.5 BGIOSGA019609_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA019609-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGC
CGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGaaaccatactaggaagcagcggagcaag
acggtttgccaagatctttgaaaccaacatcgcaaaactgtgaatgaggcttatggagcgaaaa
tctttaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAACCATACTAGGAAGCAGCGGAGCAAGACGGTTTGCCAAGATCTTTGAAACCAACATCGCAAA
ACTGTGAATGAGGCTTATGGAGCGAAAATCTTTAACTCTACAAGCATCCACCTGTTTTGGTAAG
AGAGTTATAAAGGCAGAGTTCAACTTCTTGAATTTTGACACATGTCCATGCTGAATTGCCGTTA
GTAGATGGTTACACTTTAGAAGAGTTAAATGACAGCAACCATTAGTAGATGGGAAACTCATTTT
TTTTGTGTGTTATAAATTTCAGACACAGGTTTCAACTCTGATATGTGATTCAAAGCAACTTAAG
AAGCTACCTGCAATCAGTTCCAAGTTGCAGAGTGTTAAGCATGTTATCTATATTGAGGATGAAC
CTGTTGAGGCTGAGGTACTCAATCAAATGAAGCACTGGACAACATTTTCTTTTGGTGAAGTTGA
AGAATTGGGTAAAACATCACATACAGATGCAAGATTACCTTCAAGCACTGATACTGCAGTTATT
ATGTATACAAGTGGAAGTACGGGTCTTCCCAAGGTACACTTGTGCTCAAAGATATTCTGATTTT
TTCTGTCATATGCTGTTATCTATTTTTATTCATGAAAATAAATAAGGACAAAAGCAGGGGTCAT
TCTTTCTTGTTCCTCCTTTTCTTTTTGCTTCATCTGAAGGTGTACACACATGATGAGCCTACCA
TCCTGTTACTTTCACTGAACAAGAGCTTAAGTGATGTATGATATAGAGAATTACGATCCTATTA
GCCCATTAGCTTGACAGATATTATGATAATCTCTTGGGCCTATTCTCAACGTACTCACATAACT
TCCTTTTGAACTGATGCTCTCCATAATTAAGGGCAACATTGAGAGTTATGATAATATGCAGTTA
TGCCCATTTAATTTACAAATGAGAAATAAAGCAGGACATTAAATCCTTTCTACAAATTAAATTC
ACTTTCCTGATATATACTCTCTTTTCCTCTCTTCCCCAAAGGAAAGTTGGTTTTTCCTTGGTAT
TTTTGCAAGTGCAATTACCCACTTTGCTTATTGTGGAAGGATAGCAGGGATTGGAACAGGATGA
ACCAAACTGATCCATCACTGCTTCATCCACTCCTCACCATCATGTAGAGATCCATGGACTGTTC
CAATGTACAATTAAGACCCTCTATAACCACTGGATCTCTAGGTTGACTCTAGTATTCAGAGAAA
AAAAATAAATAAATTCAGAAACCATATGCATTTTGATACGCGAAAAAGGCTCAAATTTGAAATT
CATAACGAGAACATCATTTTGCACAAACAACTCAAAATTCCTCGGATTAGGAAAAACAGGTATA
GATAAAATATATGAATTAACTGTTCATGAGTGTGACAACGTTCGTCTTTTTGACAAAATGATCA
GCATAATGCATATTTTTTTGTGCAAACTTGAATTACAATCCATTGTGGATCCACAGCTATGTAC
TTTCATTTATCACAATGTCAACCACTTTTGAGTTTGCAGTTCTTGTGTCCTCTTTTAATCCAGT
TTTATGGTTTCCTTTGACATAGGGTGTAATGATTACACATGGAAATATGGTGGCCACAACTGCA
GCTGTCATGACAATCATACCAAAACTTGGCACAGGGGATGTTTATCTGGCATACCTTCCGCTGG
CTCATGTCTTTGAACTAGCAGCAGAGGTGACATCTTTTGCAATTGAGAGATATGCCATTATTAA
GAACTGTGAATATTTCTATGACATATTGTTGTTTTGTTTGGCCAGACTGTCATGTTAGCTTCTG
GTGCTGCCATTGGATATGGCTCAGCTCTGACTATGACAGATACATCAAATAAAATAAAGAAGGG
GACAAAAGGAGATGTTTCTGCACTGAAGCCTACTCTTATGATTTCAGTCCCTGCAATTTTAGAC
CGCATCAGAGATGCCGTGTTTAAAAAGGTTCAAGATTCTCCTCTCATACCATCTATCTCAGTAG
TTTACACCATTATCTTTCCATCTTTGACTAGTTCTGCAATCTTTTATATGCCATTTGCATTCAG
CTGCAACATATCTTTAGAGTGCCTTTGATGCATTAATCATTTATATGTTTAAATATCTGCCTGT
GAATAAACTAAAGAAAAAAGTTTTGAACCATACAGGTCCTAATATTGTTTTATGTTAAGCGTTA
TCTGTATGGCCATGTACTTAATTTCCTTTTCGTTTTAGTAATGTTTGACTGTATTCGCACATGC
CACATATACATTGGTCCATCTTGGACATTTTCATGTCAACTTCTAATTTTTAGAAGGCCAAATA
AGAACAAACAACATATGGGATATTGAGGTATTGTAATGTAAGGAAATGAAGGCAGCAATTCATA
AAAATTGCAGTGCAGAGTTGGTGAGTGGTGGATTCACAACCACCACAACCTTATTTTTAAAGGA
GTGCTACTGCTAGCAATGTGCCCACGTATTTCAATGGATGTACATGCCATATGGGATCAGCTAA
AACCTAAATACTGCAAACAGTTTATATGTCACCACTTATACCTGACCACACAACTTGGTGGGGT
ATAGAAGAGCACACTATCACCCCCAATTCAGTATTTTTAAGGAATTAAGATTAGGATATAGATG
CACTGTTTGGTTGTCGTTTGCACATCTAGCAGCCTAGCAACTTGTAGATTTTTCTGTACCTTAC
ACCAGGCATATCTTAAAAAAAAAATTGATGTTCTGGCTAGCTCAATGGGCAAAGTCAAGTGCAG
GCCCCAGCCATTTCTAGCGTAGTATAACATGCATGTTTTTGGTATCATACAACACTACAACCTT
CAGTTTTGGTGCACTGCTCTGGTCTGCATCTCTTATTTCCCAACCCTAGCCATTATAATGCCTA
CCATACCGTAGCACGCTTCATGTCTTGTCTAGCATACAAGTCTGAGCTTCGGCTGAGGCTGATA
AGCCATAGAAAATGAAGCAACCGAAAATAAATTTTGGGTTAAACTGTTATACTCCCTCCGTTTT
TTAACATATGGCGCTGTTGACATTTTGAGATACATTTGACCATTCTTCTTATTAAAAAATATGT
AATTATCATTTATTTTATTATGATTTGATTTATTGTCAAATGTTCTTTAAGCATGGCTTAAATT
TTTTTATATTCGCTCTAAAATTTTGAATAGGACGAATGATCAAACGTTTATCAAAAAGTTAACG
GCATCATATATTAAAAATGGGAGGTACAAGGCTGGAGAATAGACTATGATGAGAAAACCCCAAA
TTCAACTCTAAAATTAAGTTTCAAATTCAAATTGGTTGTGGCTGATAAGCCAACAAGCAGATGA
TGAAACCGAAGGCTGGAAACATGTTTGAAACAATGAGTTTCTGTAGACTTAATATTTTAAATGC
ATTGCATCAAATGGCATGTATCATGCAGGCAGAATTGAACGGTCAAATGTTATGATCATGCACC
AAAATATGGTTTAAACATACTTCTCATCTCAAAACTTAATATTTAAATTATGTTTCCAGGTTGG
TGAGAAGGGTGGTCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAGCCATT
GAAGGAAGTTGGTTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTTTTAAAC
CAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGAG
TGACACACAAAGATTTATGAATATATGTCTTGGGTAATTTCTTTTGTCCTATTTGGATTATCTT
AAATTTAACCATTTGCATCAGTGAGATGTCATGAAGAAGTATTCTTCCAAAAATTTCCACTGAG
TTTATTTGTTGAAGATTGTGTGCCAGTCGTAGAGCATAGTGTCATTTCTCGGATACTTGAATTA
TCTTTGTTTTCTTCGAAAAATGAGGCTAGAATTACATGAATTCCAAAAACATACAAGGAGTCAA
CTTTTTTTTTGTCTTATTGTACATCTTAAGTTTGTTTAAGACGTTACTAAAAAAAATACTGATT
TTAATGAACTTACCTCATGGAAAATTCAAGTTCAATGCCATACTCAAGTCCTAGACATTGTTAG
AGTGTACGTTTGCAGGTAGTGCGCTCATCAAACCTTTGGATTTATTTATTTACAGAAAACAAAA
CATTTGTTGGATAAGCTCATAAAATTTGGGCGTGCTACTTATATGTTTTTTTAATTCAAACAGT
TTGTCAAAAATCACTTTATAGTGAAATTTGTATTTGCACGTTTAGTGAATCAAATGCTGAAAGT
TGAAATATTAAACAGAGGACCTTTCTAGAGTACATGCACTATGCTATAATGTGATGAGCTTCCT
TTTATTGTATGTCGCTGCATTTGTTTTTGGTTCTTATGCAGTTTTGAATTACCTGTGCTGCAGT
GTACCAGTAGGTCAAGGCTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGG
ATGACACAAGTGTGGGCCGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAG
Conservation Information
Conserved circRNAs osa_circ_027413*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021