Detail information of BGIOSGA015149_circ_igg.2


General Information
CircRNA Name BGIOSGA015149_circ_igg.2
ID in PlantcircBase osi_circ_005443
Alias 4:17899189|17903694
Organism Oryza sativa ssp. indica
Position chr4: 17899189-17903694  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015149_circ_igg.1 BGIOSGA015149_circ_igg.3 BGIOSGA015149_circ_g.1 BGIOSGA015149_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTAGTGTTAACAAGGAGGGGAGATAACACGCAAAAAACATACCTTATTGTTAAAGGCCATCA
ATATATTTCCACTTCGCTGCACAGCGTATCTTGATCctgacaagttttgagtccatatatcata
cacacatgcaatactttatatcagggtaagtcgagcccatacgtgataaaatcaactgttgttg
ctgttgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGACAAGTTTTGAGTCCATATATCATACACACATGCAATACTTTATATCAGGGTAAGTCGAGC
CCATACGTGATAAAATCAACTGTTGTTGCTGTTGTTGTTGCAGCAGTCTTATGAAATACCCATC
TGAAGTAAAAGGATAGTTTTAACAAATAATTACAGTTTTACGAAGAATGATAAGCACGGGTGCA
TACCTCGGCCAGTTTCCTCGGAGAACTATAGACCTTCCGTTGCTACCAAATGAACATTTCTTGT
AAAACTGAACTGTAGATTTGCGGACAGGACTGTGCAGTACTGTGCACCCCCAGTGCCTGTCAGG
ATCAGAGCAGCCACAAACCCATAAACTCATCGCTCTATTCTAGTCCTTCCAAATGTACATTTTT
TTAATGGAAATGTACATTCGTAATACTCCATCAAGATAGATTACATTCAACAAGTCATGCGCTA
CGATGTACAGCATATATATACACCACTAGCATGTCGGGGTTGAAATGCAATCTACAGTTTGCAA
TACTCGTCAGTTGAATCCTCTTGACGTTTGGTACTGGCATTCCCAACCTGCTAAACCTTTGTGG
GGGTGTCATCATGAACGAAGTAATCTTGGACCAGAATTTGACTCAATCCATGAAACAATTACGT
CAACAAGTGTATTGACATCCTTTGAGATTTGTGCTCGTAGAACGCCCGAATCCGCACCTAAAGT
GCTACCTACCTCCTTAGCAACAGCCTCCCATGGTGTCCCTGTTGCTAGATTTGTCAGGAGTTCA
CTTCCTCTGTTTACTGCATCGGCCATTGCTGGTGGAACATCAGGAAGTACCTGAAGGAAAAATA
TGTGATTACTTAGCTGAAATAAGAGAGACGGATACAATAACTTTCTCAAAAAATAATATCTTTA
GTCTAACAATAGCTTTATTCATGGACAGCACGTGCTGTACATGACAGGCTTTGTCATTTGTCAG
CACCTTTAATTCTGAGAATATATTCAGCGAAAATCACCTGCTGTAACGGTAGTCCATGATCTCC
AGGAAGTGACCGAATTGACATGTCAAGCAGTGAGCTAATGGCAGATTCGGAGCTTAGTACTTGC
GCAAGAATAGATGTTTCATCAATTTGATCATCTTTGAACTTTATCAAGAGGTTTCGAGAAATCC
CATAGTAGGATTTTACCTGCAGAAAGAAGTGTAATGCATTAGAACAATCATAAAAATAAATTAT
ATAGTGGTATTTTTTTTAAAAAAAAAACCACAACACAATAATTTGAAAAATGCTTCATGATAAT
AAATTTGCTGCCATTTATAACATAAGTTACATCTTTTTTTATTTTTAGTATCACATACAAACAA
GAAATCCAACTACATTAAACGTGATGGATTAGTTAGCTCTTTCTCTCTCTGTTTTTCTTTTCTC
CTCCCAAGTCTGAAGCAGCATGGTAATGCAGATTACTCACTTTGTCCCAGTAACATTAAGGATA
TCTCCTTTTAACTTGTTTTATGTTTGGGCATACATCATACAAGAGTCAGAACAGGGAATAATAT
TCCAACCTACTCATCCACAAATGCACAAACAAAAGGTGCTAACATTTCTTTGATTGCTGGACAG
TTCTCTAGTTATTTAGCTTATCCTGCATACATCTTTGCGCACTGAATGAATTGCATATTTTCAT
GATCGTCCAAACCTAAAGAGAGCCACATGCTGCGAGGGTTGATTAAGATGGGCGAAATAATGCT
GTAAGATCAGCAGTGTGAATTATAGAGTGGACACAGCAAATGGTCTTTGCAAGCATTTCACTAT
CATACTAATCTGTCAGGTCAATTTTAGATTATGGTAACACCAGTAAGAGCTTTGATATATTCAA
CACGTCTTCCTTTTTGTTAAAACAAACTCATATATAGATCAAAATATAATAACTCTGCCATCGT
AATTCCTTGTTTCCTTAAAGTTTGTTGTAGACTTCAAACTGAACATTTCATACATATGTACATA
CTACCCAAATTATTGGTTATTTCTATACTCATCAATCACGCCAAAAATGACATCTGTAGACTTG
GATTGAACCGAGAAAATTCAACTCAAAATGCTAACTGATGTTAGGCTGAGTTCGGTACACCATT
TTCCCAACCCACCTCTCTCGTTTTCCGCGCGCACGCCTTTCAAACTACTAAACGGTGCATTTTT
TTCAAAAATTTTATATACAAAAGTTGTTTTAAAAATTCATATTGATCCATTTTGAAAAAAAAAA
ATTAACTAATACTTAATTAATCACGTGTTAAAAGGCCGCTCCGTTTTACGTGCAGGATGGGTTT
CCATCCTGCACACCCGAACACACCCTTAGTATAGAACTGATGGTGAAAATACTTTAACAGCTCT
GGAGAATTAGTGATTTCATTTGGTTTGTATACTTCTATTTGGGCACATCTCTGCCTATATCCTC
AAAATAAGCAAGGGGAATCCACCATGATCCATTGCCTGATGATCCTTTCAAAAAGTGCAATGTG
ATGAATTGCATAGAAGATTCTGCTAGTCACCAATAAATGATATTGATGGGGAGTTGGGGATGCA
TCCTATGTCATATGATATCAGAGGCTATTCAAATTTATTAACCCAGTGGTTAGTATTGGTTAGT
TTAAAATAGAAAGTATAGAAGAAAAAAAAACATCGTTTTAGAGTTGACTTTTTAGCACTTCTAT
ATAATATTACAACAGCAGCACAGCAATTGTAGATGAAAGGTTAACATATATCCTATGCAAGCAT
CTGAAGCATTGAAAGAGAAGAATAAGCTAACTTACCAGCCGACGTGTCTCTTCTGGCTTTGGAA
CGAATTCTTCTCGGCCTTTTACTAAATCCATATACAGTGGAGGAAGTTGCTGAACTAATGGCAG
GAGCTGCTTAACAACAGGAGGGCTAAGATTCTCAAGTTGCTTAATGGCTGCTTCCGCCTGTTTT
GCAAGGATTATAATCATCTTAGCTTAAGAGGGAAGTGGCATATAATCAACACATAGGAAACATG
TGATTTGTATTTGGGAGAGTGACATGGCATCAGTAGCAATATTCAAGTGTAATAGTTGGAATGA
TCCATGTCCATTTCTATTTCATATTATTGCTATCTGAGGAAAAATTCTTTGTAACTAACATGAA
ACTTCTGGTAAATTTATGTGCTTACTGAGTTTAAAATTGAAGGGAGGCTCGCCAACATAAAACT
CGAACATTCTATTAGAGTTGGGAACTTCCTATTTTTAGAATAGTGAACAGATACTGACTTTGTC
ACTTACACCTACACCTAACACCATAAGTTCCACTTGTGATACATACTAAGAAAGATAGTACGTC
TCCAGAAACAGGAGATGTCCAAATGAGAATGACAGTGCAGGAATGAAAAGAAAATAATACCACC
ATGTGGAACAGTTGCAGACCATTCAAGCAACAGACTTTGTCATAAAATATAAAAAATCATCGTA
ACAAGTTGGCAATGGAATTCAGAAACACATCGTACCCCAAAACGAAGTGTTGGATATGATGTCA
ACTGGGAAAATATTGGCCCAAAACTCTGTGCCATGGGAACAATTACAGGCGAAAATAATGGAAC
TGCCAAGCTTGCTTCCTGCAAAAGAAAAAGAAAGAAGAAGAAAAACTACAAGTAATATTCTACT
AGTAGCTTTTAAAAGAATTAATAGCTTGAACGGAACAAAAATTCTTTTCGCTCTGGTTACAATA
GATAACATCATTCCGTCCTAACATCTAAATGCAAGTGTCTTATGACACTACGATTTTTGTACCA
AACTAACAGAGCCGCATCACATGCTTCACAGCTGATGTACCCGCTCCATGTAGATTGAAGCGTA
CAAAAGTTCTTACTTCACTTTGAAAGTTGCATTACTATGGATTACCCAATTTAAATATCTACTC
AATGAGGAATGTCCAGTTATCCACTTATCTTATCAAGAGATACAAACTAAAGCAATAAAGTATG
GATCCCTGGTCATCTACAGTGTACTAGTATGGTCTTTACCTATATGTATGTGTCTTCCCTAAGC
CATGCAATTTTCTCTACTACTTCGAAAGGACAGTCGTCCTCCTTCCTCCCCTTCCAATCTCACG
TATAAAAAGCGCTAAAAAAAGAGAAAAAAAAGTGCCAAAAACTAACCAACTGAGAAAAAAAAGA
AGAAAACCAGGAAAAGAAAAGACGATTAGTTAACGAAAAAACAACTCTGTCCTCCCCATATCTG
TCCCAAAAACCAGGAAATGTAATCTCTGCCTCCTAAAAAGAAGAAAAAAAAGAAGGAAAAACCA
GGGGGAAAAAGAACAAGCAGTTAGTCTTCCGGTGCTTTACTCGATCCACGGTCCCATCCATCCT
AATGGTATGGATATATCCTCAATTAAATAAGCCCATCGCAAAGCATGGGATTGTTACTAGTGTT
AACAAGGAGGGGAGATAACACGCAAAAAACATACCTTATTGTTAAAGGCCATCAATATATTTCC
ACTTCGCTGCACAGCGTATCTTGATC
Conservation Information
Conserved circRNAs osa_circ_023742*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021