Detail information of BGIOSGA015149_circ_g.2


General Information
CircRNA Name BGIOSGA015149_circ_g.2
ID in PlantcircBase osi_circ_005445
Alias 4:17903238|17903441
Organism Oryza sativa ssp. indica
Position chr4: 17903238-17903441  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA015149
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015149_circ_igg.1 BGIOSGA015149_circ_igg.2 BGIOSGA015149_circ_igg.3 BGIOSGA015149_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAAGAAGAAAACCAGGAAAAGAAAAGACGATTAGTTAACGAAAAAACAACTCTGTCCTCCCC
ATATCTGTCCCAAAAACCAGGAAATGTAATCTCTGCtacttcgaaaggacagtcgtcctccttc
ctccccttccaatctcacgtataaaaagcgctaaaaaaagagaaaaaaaagtgccaaaaactaa
ccaactga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACTTCGAAAGGACAGTCGTCCTCCTTCCTCCCCTTCCAATCTCACGTATAAAAAGCGCTAAAA
AAAGAGAAAAAAAAGTGCCAAAAACTAACCAACTGAGAAAAAAAAGAAGAAAACCAGGAAAAGA
AAAGACGATTAGTTAACGAAAAAACAACTCTGTCCTCCCCATATCTGTCCCAAAAACCAGGAAA
TGTAATCTCTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021