Detail information of Os04g0405600_circ_g.1


General Information
CircRNA Name Os04g0405600_circ_g.1
ID in PlantcircBase osa_circ_023742
Alias Os04circ04792
Organism Oryza sativa
Position chr4: 20124717-20129220  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method SMALT, Segemehl
Parent gene Os04g0405600
Parent gene annotation Protein of unknown function DUF1350 family protein. (Os04t040560
0-01);Protein of unknown function DUF1350 family protein. (Os04t
0405600-02)
Parent gene strand -
Alternative splicing Os04g0405600_circ_g.2 Os04g0405600_circ_g.3
Support reads 2
Tissues panicle
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0405600-02:5
Os04t0405600-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTAGTGTTAACAAGGAGGGGAGATAACACGCAAAAAACATACCTTATTGTTAAAGGCCATCA
ATATATTTCCACTTCGCTGCACAGCGTATCTTGATCctgaaaagttttgagtacatatatcata
cacacatgcaatactttatatcagggtaagtcgagcccatatgtgataaaatcaactgttgttg
ctgttgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAAAGTTTTGAGTACATATATCATACACACATGCAATACTTTATATCAGGGTAAGTCGAGC
CCATATGTGATAAAATCAACTGTTGTTGCTGTTGTTGTTGCAGCAGTCTTATGAAATACCCATC
TGAAGTAAAAGGATAGTTTTAACAAATAATTACAGTTTTACGAAGAATGATAAGCACGGGTGCA
TACCTCGGCCAGTTTCCTCGGAGAACTATAGACCTTCCGTTGCTACCAAATGAACATTTCTTGT
AAAACTGAACTGTAGATTTGCGGACAGGACTGTGCAGTACTGTGCACCCCCAGTGCCTGTCAGG
ATCAGAGCAGCCACAAACCCATAAACTCATCGCTCTATTCTAGTCCTTCCAAATGTACATTTTT
TTAATGGAAATGTACATTCATAATACTCCATCAAGATAGATTACATTCAACAAGTCATGCGCTA
CGATGTACAGCATATATATACACCACTAGCATGTCGGGGTTGAAATGCAATCTACAGTTTGCAA
TACTCGTCAGTTGAATCCTCTTGACGTTTGGTACTGGCATTCCCAACCTGCTAAACCTTTGTGG
GGGTGTCATCATGAACGAAGTAATCTTGGACCAGAATTTGACTCAATCCATGAAACAATTACGT
CAACAAGTGTATTGACATCCTTTGAGATTTGTGCTCGTAGAACGCCCGAATCCGCACCTAAAGT
GCTACCTACCTCCTTAGCAACAGCCTCCCATGGTGTCCCTGTTGCTAGATTTGTCAGGAGTTCA
CCTCCTCTGTTTACTGCATCGGCCATTGCTGGTGGAACATCAGGAAGTACCTGAAGGAAAAATA
TGTGATTACTTAGCTGAAATAAGAGAGACGGATACAATAACTTTCTCAAAAAATAATATCTTTA
GTCTAACAATAGCTTTATTCATGGACAGCACGTGCTGTACATGACAGGCTTTGTCATTTGTCAG
CACCTTTAATTCTGAGAATATATTCAGCGAAAATCACCTGCTGTAACGGTAGTCCATGATCTCC
AGGAAGTGACCGAATTGACATGTCAAGCAGTGAGCTAATGGCAGATTCGGAGCTTAGTACTTGC
GCAAGAATAGATGTTTCATCAATTTGATCATCTTTGAACTTTATCAAGAGGTTTCGAGAAATCC
CATAGTAGGATTTTACCTGCAGAAAGAAGTGTAATGCATTAGAACAATCATAAAAATAAATTAT
ATAGTGGTATTTTTTTTAAAAAAAAACCACAACACAATAATTTGAAAAATGCTTCATGATAATA
AATTTGCTGCCATTTATAACATAAGTTACATCTTTTTTTATTTTTAGTATCACATACAAACAAG
AAATCCAACTACATTAAACGTGATGGATTAGTTAGCTCTTTCTCTCTCTGTTTTTCTTTTCTCC
TCCCAAGTCTGAAGCAGCATGGTAATGCATATTACTCACTTTGTCCCAGTAACATTAAGGATAT
CTCCTTTTAACTTGTTTTATGTTTGGGCATACATCATACAAGAGTCAGAACAGGGAATAATATT
CCAACCTACTCATCCACAAATGCACAAACAAAAGGTGCTAACATTTCTTTGATTGCTGGACAGT
TCTCTAGTTATTTAGCTTATCCTGCATACATCTTTGCGCACTGAATGAATTGCATATTTTCATG
ATTGTCCAAACCTAAAGAGAGCCACATGCTGCGAGGGTTGATTAAGATGGGCGAAATAATGCTG
TAAGATCAGCAGTGTGAATTATAGAGTGGACACAGCAAATGGTCTTTGCAAGCATTTCACTATC
ATACTAATCTGTCAGGTCAATTTTAGATTATGGTAACACCAGTAAGAGCTTTGATATATTCAAC
ACGTCTTCCTTTTTGTTAAAACAAACTCATATATAGATCAAAATATAATAACTCTGCCATCGTA
ATTCCTTGTTTCCTTAAAGTTTGTTGTAGACTTCAAACTGAACATTTCATACATATGTACATAC
TACCCAAATTATTGGTTATTTCTATACTCATCAATCACGCCAAAAATGACATTTGTAGACTTGG
ATTGAACCGAGAAAATTCAACTCAAAATGCTAACTGATGTTAGGCTGAGTTCGGTACACCATTT
TCCCAACCCACCTCTCTCGTTTTCCGCGCGCACGCTTTTCAAACTACTAAACGGTGCATTTTTT
TCAAAAATTTTATATACAAAAGTTGTTTTAAAAATTCATATTGATGCATTTTGAAAAAAAAATA
ACTAATACTTAATTAATCACATGTTAAAAGGCCGCTCCGTTTTACGTGCAGGATGGGTTTCCAT
CCTGCACACCTGAACACACCCTTAGTATAGAACTGATGGTGAAAATACTTTAACAGCTCTGGAG
AATTAGTGATTTCATTTGGTTTGTATACTTCTATTTGGGCACATCTCTGCCTATATCCTCAAAA
TATGCAAGGGGAATCCACCATGATCCATTGCCTGATGATCCTTTCAAAAAGTGCAATGTGATGA
ATTGCATAGAAGATTCTGCTAGTCACCAATAAATGATATTGATGGGGAGTTGGGGATGCATCCT
ATGTCATATGATATCAGAGGCTATTCAAATTTATTAACCCAGTGGTTAGTATTGGTTAGTTTAA
AATAGAAAGTATAGAAGAAAAAAAAACATCGTTTTAGAGTTGACTTTTTAGCACTTCTATATAA
TATTACAACAGCAGCACAGCAATTGTAGATGAAAGGTTAACATATATCCTATGCAAGCATCTGA
AGCATTGAAAGAGACGAATAAGCTAACTTACCAGCCGACGTGTCTCTTCTGGCTTTGGAACGAA
TTCTTCTCGGCCTTTTACTAAATCCATATACAGTGGAGGAAGTTGCTGAACTAATGGCAGGAGC
TGCTTAACAACAGGAGGGCTAAGATTCTCAAGTTGCTTAATGGCTGCTTCCGCCTGTTTTGCAA
GGATTATAATCATCTTAGCTTAAGAGGGAAGTGGCATATAATCAACACATAGGAAACATGTGAT
TTGTATTTGGGAGAGTGACATGGCATCAGTAGCAATATTCAAGTGTAATAGTTGGAATGATCCA
TGTCCATTTCTATTTCATATTATTGCTATCTGAGGAAAAATTCTTTGTAACTAACATGAAACAA
GGTGGTAAATTTATGTGCTTACTGAGTTTAAAATTGAAGGGAGGCTCGCCAACATAAAACTCGA
ACATTCTATTAGAGTTGGGAACTTCCTATTTTTAGAATAGTGAACAGATACCGACTTTGTCACT
TACACCTACACCTAACACCATAAGTTCCACTTGTGATACATACTAAGAAAGATAGTACGTCTCC
AGAAACAGGAGATGTCCAAATGAGAATGACAGTGCAGGGATGAAAAGAAAATAATACCACCATG
TGGAACAGTTGCAGACCATTCAAGCAACAGACTTTGTCATAAAATATAAAAAATCATCGTAACA
ATTTGGCAATGGAATTCAGAAACACATCGTACCCCAAAACGAAGTGTTGGATATGATGTCAACT
GGGAAAATATTGGCCCAAAACTCTGTGCCATGGGAACAATTACAGGCGAAAATAATGGAACTGC
CAAGCTTGCTTCCTGCAAAAGAAAAAGAAAGAAGAAGAAAAACTACAAGTAATATTCTACTAGT
AGCTTTTAAAAGAATTAATAGATTGAACGGAACAAAAATTCTTTTCGCTCTGGTTACAATAGAT
AACATCATTCCGTCCTAACATCTAAATGCAAGTGTCTTATGACACTACGATTTTTGTACCAAAC
TAACAGAGCCGCATCACATGCTTCGCAGCTGATGTACCCGCTCCATGTAGATTGAAGCGTACAA
AAGTTCTTACTTCACTCTGAAAGTTGCATTACTATGGATTACCAAATTTAAATATCTACTCAAT
GAGGAATGTCCAGTTATCCACTTATCTTATCAAGAGATACAAACTAAAGCAATAAAGTATGGAT
CCCTGGTCATCTACAGTGTACTAGTATGGTCTTTACCTATATGTATGTGTCTTCCCTAAGCCAT
GCAATTTTCTCTACTACTTCGAAAGGACAGTCATCCTCCTTCCTCCCCTTCCAATCTCACGTAT
AAAAAGCGCTAAAAAAAGAGAAAAAAAAGTGCCAAAAACTAACCAACTGAGAAAAAAAAGAAGA
AAACCAGGAAAAGAAAAGACGATTAGTTAACGAAAAAAACAACTCTGTCCTCCCCATATCTGTC
CCAAAAACCAGGAAATGTAATCTCTGCCTCCTAAAAAGAAGAAAAAAAAGAAGGAAAAACCAGG
GGAAAAAAGAACAAGCAGTTAGTCTTCCGGTGCTTTACTCGATCCACGGTCCCATCCATCCTAA
TGGTATGGATATATCCTCAATTAAATAAGCCCATTGCAAAGCATGGGATTGTTACTAGTGTTAA
CAAGGAGGGGAGATAACACGCAAAAAACATACCTTATTGTTAAAGGCCATCAATATATTTCCAC
TTCGCTGCACAGCGTATCTTGATC
Conservation Information
Conserved circRNAs osi_circ_005443* osi_circ_014326
PMCS 0.203430231
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015