Detail information of BGIOSGA015149_circ_igg.3


General Information
CircRNA Name BGIOSGA015149_circ_igg.3
ID in PlantcircBase osi_circ_005444
Alias 4:17899384|17903694
Organism Oryza sativa ssp. indica
Position chr4: 17899384-17903694  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015149_circ_igg.1 BGIOSGA015149_circ_igg.2 BGIOSGA015149_circ_g.1 BGIOSGA015149_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTAGTGTTAACAAGGAGGGGAGATAACACGCAAAAAACATACCTTATTGTTAAAGGCCATCA
ATATATTTCCACTTCGCTGCACAGCGTATCTTGATCctcggccagtttcctcggagaactatag
accttccgttgctaccaaatgaacatttcttgtaaaactgaactgtagatttgcggacaggact
gtgcagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGGCCAGTTTCCTCGGAGAACTATAGACCTTCCGTTGCTACCAAATGAACATTTCTTGTAAA
ACTGAACTGTAGATTTGCGGACAGGACTGTGCAGTACTGTGCACCCCCAGTGCCTGTCAGGATC
AGAGCAGCCACAAACCCATAAACTCATCGCTCTATTCTAGTCCTTCCAAATGTACATTTTTTTA
ATGGAAATGTACATTCGTAATACTCCATCAAGATAGATTACATTCAACAAGTCATGCGCTACGA
TGTACAGCATATATATACACCACTAGCATGTCGGGGTTGAAATGCAATCTACAGTTTGCAATAC
TCGTCAGTTGAATCCTCTTGACGTTTGGTACTGGCATTCCCAACCTGCTAAACCTTTGTGGGGG
TGTCATCATGAACGAAGTAATCTTGGACCAGAATTTGACTCAATCCATGAAACAATTACGTCAA
CAAGTGTATTGACATCCTTTGAGATTTGTGCTCGTAGAACGCCCGAATCCGCACCTAAAGTGCT
ACCTACCTCCTTAGCAACAGCCTCCCATGGTGTCCCTGTTGCTAGATTTGTCAGGAGTTCACTT
CCTCTGTTTACTGCATCGGCCATTGCTGGTGGAACATCAGGAAGTACCTGAAGGAAAAATATGT
GATTACTTAGCTGAAATAAGAGAGACGGATACAATAACTTTCTCAAAAAATAATATCTTTAGTC
TAACAATAGCTTTATTCATGGACAGCACGTGCTGTACATGACAGGCTTTGTCATTTGTCAGCAC
CTTTAATTCTGAGAATATATTCAGCGAAAATCACCTGCTGTAACGGTAGTCCATGATCTCCAGG
AAGTGACCGAATTGACATGTCAAGCAGTGAGCTAATGGCAGATTCGGAGCTTAGTACTTGCGCA
AGAATAGATGTTTCATCAATTTGATCATCTTTGAACTTTATCAAGAGGTTTCGAGAAATCCCAT
AGTAGGATTTTACCTGCAGAAAGAAGTGTAATGCATTAGAACAATCATAAAAATAAATTATATA
GTGGTATTTTTTTTAAAAAAAAAACCACAACACAATAATTTGAAAAATGCTTCATGATAATAAA
TTTGCTGCCATTTATAACATAAGTTACATCTTTTTTTATTTTTAGTATCACATACAAACAAGAA
ATCCAACTACATTAAACGTGATGGATTAGTTAGCTCTTTCTCTCTCTGTTTTTCTTTTCTCCTC
CCAAGTCTGAAGCAGCATGGTAATGCAGATTACTCACTTTGTCCCAGTAACATTAAGGATATCT
CCTTTTAACTTGTTTTATGTTTGGGCATACATCATACAAGAGTCAGAACAGGGAATAATATTCC
AACCTACTCATCCACAAATGCACAAACAAAAGGTGCTAACATTTCTTTGATTGCTGGACAGTTC
TCTAGTTATTTAGCTTATCCTGCATACATCTTTGCGCACTGAATGAATTGCATATTTTCATGAT
CGTCCAAACCTAAAGAGAGCCACATGCTGCGAGGGTTGATTAAGATGGGCGAAATAATGCTGTA
AGATCAGCAGTGTGAATTATAGAGTGGACACAGCAAATGGTCTTTGCAAGCATTTCACTATCAT
ACTAATCTGTCAGGTCAATTTTAGATTATGGTAACACCAGTAAGAGCTTTGATATATTCAACAC
GTCTTCCTTTTTGTTAAAACAAACTCATATATAGATCAAAATATAATAACTCTGCCATCGTAAT
TCCTTGTTTCCTTAAAGTTTGTTGTAGACTTCAAACTGAACATTTCATACATATGTACATACTA
CCCAAATTATTGGTTATTTCTATACTCATCAATCACGCCAAAAATGACATCTGTAGACTTGGAT
TGAACCGAGAAAATTCAACTCAAAATGCTAACTGATGTTAGGCTGAGTTCGGTACACCATTTTC
CCAACCCACCTCTCTCGTTTTCCGCGCGCACGCCTTTCAAACTACTAAACGGTGCATTTTTTTC
AAAAATTTTATATACAAAAGTTGTTTTAAAAATTCATATTGATCCATTTTGAAAAAAAAAAATT
AACTAATACTTAATTAATCACGTGTTAAAAGGCCGCTCCGTTTTACGTGCAGGATGGGTTTCCA
TCCTGCACACCCGAACACACCCTTAGTATAGAACTGATGGTGAAAATACTTTAACAGCTCTGGA
GAATTAGTGATTTCATTTGGTTTGTATACTTCTATTTGGGCACATCTCTGCCTATATCCTCAAA
ATAAGCAAGGGGAATCCACCATGATCCATTGCCTGATGATCCTTTCAAAAAGTGCAATGTGATG
AATTGCATAGAAGATTCTGCTAGTCACCAATAAATGATATTGATGGGGAGTTGGGGATGCATCC
TATGTCATATGATATCAGAGGCTATTCAAATTTATTAACCCAGTGGTTAGTATTGGTTAGTTTA
AAATAGAAAGTATAGAAGAAAAAAAAACATCGTTTTAGAGTTGACTTTTTAGCACTTCTATATA
ATATTACAACAGCAGCACAGCAATTGTAGATGAAAGGTTAACATATATCCTATGCAAGCATCTG
AAGCATTGAAAGAGAAGAATAAGCTAACTTACCAGCCGACGTGTCTCTTCTGGCTTTGGAACGA
ATTCTTCTCGGCCTTTTACTAAATCCATATACAGTGGAGGAAGTTGCTGAACTAATGGCAGGAG
CTGCTTAACAACAGGAGGGCTAAGATTCTCAAGTTGCTTAATGGCTGCTTCCGCCTGTTTTGCA
AGGATTATAATCATCTTAGCTTAAGAGGGAAGTGGCATATAATCAACACATAGGAAACATGTGA
TTTGTATTTGGGAGAGTGACATGGCATCAGTAGCAATATTCAAGTGTAATAGTTGGAATGATCC
ATGTCCATTTCTATTTCATATTATTGCTATCTGAGGAAAAATTCTTTGTAACTAACATGAAACT
TCTGGTAAATTTATGTGCTTACTGAGTTTAAAATTGAAGGGAGGCTCGCCAACATAAAACTCGA
ACATTCTATTAGAGTTGGGAACTTCCTATTTTTAGAATAGTGAACAGATACTGACTTTGTCACT
TACACCTACACCTAACACCATAAGTTCCACTTGTGATACATACTAAGAAAGATAGTACGTCTCC
AGAAACAGGAGATGTCCAAATGAGAATGACAGTGCAGGAATGAAAAGAAAATAATACCACCATG
TGGAACAGTTGCAGACCATTCAAGCAACAGACTTTGTCATAAAATATAAAAAATCATCGTAACA
AGTTGGCAATGGAATTCAGAAACACATCGTACCCCAAAACGAAGTGTTGGATATGATGTCAACT
GGGAAAATATTGGCCCAAAACTCTGTGCCATGGGAACAATTACAGGCGAAAATAATGGAACTGC
CAAGCTTGCTTCCTGCAAAAGAAAAAGAAAGAAGAAGAAAAACTACAAGTAATATTCTACTAGT
AGCTTTTAAAAGAATTAATAGCTTGAACGGAACAAAAATTCTTTTCGCTCTGGTTACAATAGAT
AACATCATTCCGTCCTAACATCTAAATGCAAGTGTCTTATGACACTACGATTTTTGTACCAAAC
TAACAGAGCCGCATCACATGCTTCACAGCTGATGTACCCGCTCCATGTAGATTGAAGCGTACAA
AAGTTCTTACTTCACTTTGAAAGTTGCATTACTATGGATTACCCAATTTAAATATCTACTCAAT
GAGGAATGTCCAGTTATCCACTTATCTTATCAAGAGATACAAACTAAAGCAATAAAGTATGGAT
CCCTGGTCATCTACAGTGTACTAGTATGGTCTTTACCTATATGTATGTGTCTTCCCTAAGCCAT
GCAATTTTCTCTACTACTTCGAAAGGACAGTCGTCCTCCTTCCTCCCCTTCCAATCTCACGTAT
AAAAAGCGCTAAAAAAAGAGAAAAAAAAGTGCCAAAAACTAACCAACTGAGAAAAAAAAGAAGA
AAACCAGGAAAAGAAAAGACGATTAGTTAACGAAAAAACAACTCTGTCCTCCCCATATCTGTCC
CAAAAACCAGGAAATGTAATCTCTGCCTCCTAAAAAGAAGAAAAAAAAGAAGGAAAAACCAGGG
GGAAAAAGAACAAGCAGTTAGTCTTCCGGTGCTTTACTCGATCCACGGTCCCATCCATCCTAAT
GGTATGGATATATCCTCAATTAAATAAGCCCATCGCAAAGCATGGGATTGTTACTAGTGTTAAC
AAGGAGGGGAGATAACACGCAAAAAACATACCTTATTGTTAAAGGCCATCAATATATTTCCACT
TCGCTGCACAGCGTATCTTGATC
Conservation Information
Conserved circRNAs osa_circ_023743*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021