Detail information of BGIOSGA015149_circ_igg.1


General Information
CircRNA Name BGIOSGA015149_circ_igg.1
ID in PlantcircBase osi_circ_014326
Alias Chr04:20664926_20669432(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17899188-17903694  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015149_circ_igg.2 BGIOSGA015149_circ_igg.3 BGIOSGA015149_circ_g.1 BGIOSGA015149_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTAGTGTTAACAAGGAGGGGAGATAACACGCAAAAAACATACCTTATTGTTAAAGGCCATCA
ATATATTTCCACTTCGCTGCACAGCGTATCTTGATCcctgacaagttttgagtccatatatcat
acacacatgcaatactttatatcagggtaagtcgagcccatacgtgataaaatcaactgttgtt
gctgttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGACAAGTTTTGAGTCCATATATCATACACACATGCAATACTTTATATCAGGGTAAGTCGAG
CCCATACGTGATAAAATCAACTGTTGTTGCTGTTGTTGTTGCAGCAGTCTTATGAAATACCCAT
CTGAAGTAAAAGGATAGTTTTAACAAATAATTACAGTTTTACGAAGAATGATAAGCACGGGTGC
ATACCTCGGCCAGTTTCCTCGGAGAACTATAGACCTTCCGTTGCTACCAAATGAACATTTCTTG
TAAAACTGAACTGTAGATTTGCGGACAGGACTGTGCAGTACTGTGCACCCCCAGTGCCTGTCAG
GATCAGAGCAGCCACAAACCCATAAACTCATCGCTCTATTCTAGTCCTTCCAAATGTACATTTT
TTTAATGGAAATGTACATTCGTAATACTCCATCAAGATAGATTACATTCAACAAGTCATGCGCT
ACGATGTACAGCATATATATACACCACTAGCATGTCGGGGTTGAAATGCAATCTACAGTTTGCA
ATACTCGTCAGTTGAATCCTCTTGACGTTTGGTACTGGCATTCCCAACCTGCTAAACCTTTGTG
GGGGTGTCATCATGAACGAAGTAATCTTGGACCAGAATTTGACTCAATCCATGAAACAATTACG
TCAACAAGTGTATTGACATCCTTTGAGATTTGTGCTCGTAGAACGCCCGAATCCGCACCTAAAG
TGCTACCTACCTCCTTAGCAACAGCCTCCCATGGTGTCCCTGTTGCTAGATTTGTCAGGAGTTC
ACTTCCTCTGTTTACTGCATCGGCCATTGCTGGTGGAACATCAGGAAGTACCTGAAGGAAAAAT
ATGTGATTACTTAGCTGAAATAAGAGAGACGGATACAATAACTTTCTCAAAAAATAATATCTTT
AGTCTAACAATAGCTTTATTCATGGACAGCACGTGCTGTACATGACAGGCTTTGTCATTTGTCA
GCACCTTTAATTCTGAGAATATATTCAGCGAAAATCACCTGCTGTAACGGTAGTCCATGATCTC
CAGGAAGTGACCGAATTGACATGTCAAGCAGTGAGCTAATGGCAGATTCGGAGCTTAGTACTTG
CGCAAGAATAGATGTTTCATCAATTTGATCATCTTTGAACTTTATCAAGAGGTTTCGAGAAATC
CCATAGTAGGATTTTACCTGCAGAAAGAAGTGTAATGCATTAGAACAATCATAAAAATAAATTA
TATAGTGGTATTTTTTTTAAAAAAAAAACCACAACACAATAATTTGAAAAATGCTTCATGATAA
TAAATTTGCTGCCATTTATAACATAAGTTACATCTTTTTTTATTTTTAGTATCACATACAAACA
AGAAATCCAACTACATTAAACGTGATGGATTAGTTAGCTCTTTCTCTCTCTGTTTTTCTTTTCT
CCTCCCAAGTCTGAAGCAGCATGGTAATGCAGATTACTCACTTTGTCCCAGTAACATTAAGGAT
ATCTCCTTTTAACTTGTTTTATGTTTGGGCATACATCATACAAGAGTCAGAACAGGGAATAATA
TTCCAACCTACTCATCCACAAATGCACAAACAAAAGGTGCTAACATTTCTTTGATTGCTGGACA
GTTCTCTAGTTATTTAGCTTATCCTGCATACATCTTTGCGCACTGAATGAATTGCATATTTTCA
TGATCGTCCAAACCTAAAGAGAGCCACATGCTGCGAGGGTTGATTAAGATGGGCGAAATAATGC
TGTAAGATCAGCAGTGTGAATTATAGAGTGGACACAGCAAATGGTCTTTGCAAGCATTTCACTA
TCATACTAATCTGTCAGGTCAATTTTAGATTATGGTAACACCAGTAAGAGCTTTGATATATTCA
ACACGTCTTCCTTTTTGTTAAAACAAACTCATATATAGATCAAAATATAATAACTCTGCCATCG
TAATTCCTTGTTTCCTTAAAGTTTGTTGTAGACTTCAAACTGAACATTTCATACATATGTACAT
ACTACCCAAATTATTGGTTATTTCTATACTCATCAATCACGCCAAAAATGACATCTGTAGACTT
GGATTGAACCGAGAAAATTCAACTCAAAATGCTAACTGATGTTAGGCTGAGTTCGGTACACCAT
TTTCCCAACCCACCTCTCTCGTTTTCCGCGCGCACGCCTTTCAAACTACTAAACGGTGCATTTT
TTTCAAAAATTTTATATACAAAAGTTGTTTTAAAAATTCATATTGATCCATTTTGAAAAAAAAA
AATTAACTAATACTTAATTAATCACGTGTTAAAAGGCCGCTCCGTTTTACGTGCAGGATGGGTT
TCCATCCTGCACACCCGAACACACCCTTAGTATAGAACTGATGGTGAAAATACTTTAACAGCTC
TGGAGAATTAGTGATTTCATTTGGTTTGTATACTTCTATTTGGGCACATCTCTGCCTATATCCT
CAAAATAAGCAAGGGGAATCCACCATGATCCATTGCCTGATGATCCTTTCAAAAAGTGCAATGT
GATGAATTGCATAGAAGATTCTGCTAGTCACCAATAAATGATATTGATGGGGAGTTGGGGATGC
ATCCTATGTCATATGATATCAGAGGCTATTCAAATTTATTAACCCAGTGGTTAGTATTGGTTAG
TTTAAAATAGAAAGTATAGAAGAAAAAAAAACATCGTTTTAGAGTTGACTTTTTAGCACTTCTA
TATAATATTACAACAGCAGCACAGCAATTGTAGATGAAAGGTTAACATATATCCTATGCAAGCA
TCTGAAGCATTGAAAGAGAAGAATAAGCTAACTTACCAGCCGACGTGTCTCTTCTGGCTTTGGA
ACGAATTCTTCTCGGCCTTTTACTAAATCCATATACAGTGGAGGAAGTTGCTGAACTAATGGCA
GGAGCTGCTTAACAACAGGAGGGCTAAGATTCTCAAGTTGCTTAATGGCTGCTTCCGCCTGTTT
TGCAAGGATTATAATCATCTTAGCTTAAGAGGGAAGTGGCATATAATCAACACATAGGAAACAT
GTGATTTGTATTTGGGAGAGTGACATGGCATCAGTAGCAATATTCAAGTGTAATAGTTGGAATG
ATCCATGTCCATTTCTATTTCATATTATTGCTATCTGAGGAAAAATTCTTTGTAACTAACATGA
AACTTCTGGTAAATTTATGTGCTTACTGAGTTTAAAATTGAAGGGAGGCTCGCCAACATAAAAC
TCGAACATTCTATTAGAGTTGGGAACTTCCTATTTTTAGAATAGTGAACAGATACTGACTTTGT
CACTTACACCTACACCTAACACCATAAGTTCCACTTGTGATACATACTAAGAAAGATAGTACGT
CTCCAGAAACAGGAGATGTCCAAATGAGAATGACAGTGCAGGAATGAAAAGAAAATAATACCAC
CATGTGGAACAGTTGCAGACCATTCAAGCAACAGACTTTGTCATAAAATATAAAAAATCATCGT
AACAAGTTGGCAATGGAATTCAGAAACACATCGTACCCCAAAACGAAGTGTTGGATATGATGTC
AACTGGGAAAATATTGGCCCAAAACTCTGTGCCATGGGAACAATTACAGGCGAAAATAATGGAA
CTGCCAAGCTTGCTTCCTGCAAAAGAAAAAGAAAGAAGAAGAAAAACTACAAGTAATATTCTAC
TAGTAGCTTTTAAAAGAATTAATAGCTTGAACGGAACAAAAATTCTTTTCGCTCTGGTTACAAT
AGATAACATCATTCCGTCCTAACATCTAAATGCAAGTGTCTTATGACACTACGATTTTTGTACC
AAACTAACAGAGCCGCATCACATGCTTCACAGCTGATGTACCCGCTCCATGTAGATTGAAGCGT
ACAAAAGTTCTTACTTCACTTTGAAAGTTGCATTACTATGGATTACCCAATTTAAATATCTACT
CAATGAGGAATGTCCAGTTATCCACTTATCTTATCAAGAGATACAAACTAAAGCAATAAAGTAT
GGATCCCTGGTCATCTACAGTGTACTAGTATGGTCTTTACCTATATGTATGTGTCTTCCCTAAG
CCATGCAATTTTCTCTACTACTTCGAAAGGACAGTCGTCCTCCTTCCTCCCCTTCCAATCTCAC
GTATAAAAAGCGCTAAAAAAAGAGAAAAAAAAGTGCCAAAAACTAACCAACTGAGAAAAAAAAG
AAGAAAACCAGGAAAAGAAAAGACGATTAGTTAACGAAAAAACAACTCTGTCCTCCCCATATCT
GTCCCAAAAACCAGGAAATGTAATCTCTGCCTCCTAAAAAGAAGAAAAAAAAGAAGGAAAAACC
AGGGGGAAAAAGAACAAGCAGTTAGTCTTCCGGTGCTTTACTCGATCCACGGTCCCATCCATCC
TAATGGTATGGATATATCCTCAATTAAATAAGCCCATCGCAAAGCATGGGATTGTTACTAGTGT
TAACAAGGAGGGGAGATAACACGCAAAAAACATACCTTATTGTTAAAGGCCATCAATATATTTC
CACTTCGCTGCACAGCGTATCTTGATC
Conservation Information
Conserved circRNAs osa_circ_023742
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021