Detail information of Os03g0114300_circ_g.1


General Information
CircRNA Name Os03g0114300_circ_g.1
ID in PlantcircBase osa_circ_017584
Alias NA
Organism Oryza sativa
Position chr3: 801176-808410  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0114300
Parent gene annotation Serine/threonine protein kinase domain containing protein. (Os03
t0114300-01);Similar to ATP binding protein. (Os03t0114300-02)
Parent gene strand +
Alternative splicing Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.3 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0114300-01:20
Os03t0114300-02:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGGTTGCCTGATGATCAATGCAGTAACATACCTTTCTACCTTGCAGAATGATTTCATTAACC
GATGAACTGATCACAACAAAACTGCAACATGTCCAGgatgatataagaaaagaggcacaaacga
tgagcttgatagatcaccctaatgtcatcagggcttactgctcatttgttgtggatcataacct
ctgggtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.111311914
Functional Information
Coding potential Y
Potential coding position 801204-808407(+)
Potential amino acid sequence MSLIDHPNVIRAYCSFVVDHNLWVIMPFMSEGSCLHLMKVAYPDGFEEPVIASILKETLKALEY
LHRQGHIHRDVKAGNILMDSPGIVKLGDFGVSACMFDRGDRQRSRNTFVGTPCWMAPEVLQPGA
GYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYDRDKRFSKSFKEMVAMC
LVKDQTKRPTAEKLLKHSFFKNAKPPELTVKSILTDLPPLWDRVKALQLKDAAQLALKKMPSSE
QEALSMSEYQRGVSAWNFDIEDLKAQASLIHDDDPPEIKEDVDNDRINEADKEPFSGNHFGQPK
ILSGKHFSEQTCVTAVSPGGNMHETSRGLVSEPGDADSERKVDGYRKQGSENESLPSTSKHDSE
GQNSSSEVKQKERTCSGPILCSGVHNKSITESSRIFDREAAVKLASDKQKSCTKRTTNLSGPLA
LPTRASANSLSAPIRSSGGYVGSLGDKSKRSVVEIKGRFSVTSENVDLAKVQEVPTSGISRKLQ
EGSSLRKSASVGHWPVDAKPMSNSHQRKELCNGSVSASVLIPHLRNLVQQTTFQQDLITNLLSS
LQQNEKADATQYRLGNMDGDTEVETSISEGERSLLVKIFELQSRMISLTDELITTKLQHVQDDI
RKEAQTMSLIDHPNVIRAYCSFVVDHNLWVIMPFMSEGSCLHLMKVAYPDGFEEPVIASILKET
LKALEYLHRQGHIHRDVKAGNILMDSPGIVKLGDFGVSACMFDRGDRQRSRNTFVGTPCWMAPE
VLQPGAGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYDRDKRFSKSFK
EMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPELTVKSILTDLPPLWDRVKALQLKDAAQLALK
KMPSSEQEALSMSEYQRGVSAWNFDIEDLKAQASLIHDDDPPEIKEDVDNDRINEADKEPFSGN
HFGQPKILSGKHFSEQTCVTAVSPGGNMHETSRGLVSEPGDADSERKVDGYRKQGSENESLPST
SKHDSEGQNSSSEVKQKERTCSGPILCSGVHNKSITESSRIFDREAAVKLASDKQKSCTKRTTN
LSGPLALPTRASANSLSAPIRSSGGYVGSLGDKSKRSVVEIKGRFSVTSENVDLAKVQEVPTSG
ISRKLQEGSSLRKSASVGHWPVDAKPMSNSHQRKELCNGSVSASVLIPHLRNLVQQTTFQQDLI
TNLLSSLQQNEKADATQYRLGNMDGDTEVETSISEGERSLLVKIFELQSRMISLTDELITTKLQ
HVQDDIRKEAQTMSLIDHPNVIRAYCSFVVDHNLWVIMPFMSEGSCLHLMKVAYPDGFEEPVIA
SILKETLKALEYLHRQGHIHRDVKAGNILMDSPGIVKLGDFGVSACMFDRGDRQRSRNTFVGTP
CWMAPEVLQPGAGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYDRDKR
FSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPELTVKSILTDLPPLWDRVKALQLKDA
AQLALKKMPSSEQEALSMSEYQRGVSAWNFDIEDLKAQASLIHDDDPPEIKEDVDNDRINEADK
EPFSGNHFGQPKILSGKHFSEQTCVTAVSPGGNMHETSRGLVSEPGDADSERKVDGYRKQGSEN
ESLPSTSKHDSEGQNSSSEVKQKERTCSGPILCSGVHNKSITESSRIFDREAAVKLASDKQKSC
TKRTTNLSGPLALPTRASANSLSAPIRSSGGYVGSLGDKSKRSVVEIKGRFSVTSENVDLAKVQ
EVPTSGISRKLQEGSSLRKSASVGHWPVDAKPMSNSHQRKELCNGSVSASVLIPHLRNLVQQTT
FQQDLITNLLSSLQQNEKADATQYRLGNMDGDTEVETSISEGERSLLVKIFELQSRMISLTDEL
ITTKLQHVQDDIRKEAQTMSLIDHPNVIRAYCSFVVDHNLWVIMPFMSEGSCLHLMKVAYPDGF
EEPVIASILKETLKALEYLHRQGHIHRDVKAGNILMDSPGIVKLGDFGVSACMFDRGDRQRSRN
TFVGTPCWMAPEVLQPGAGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLD
YDRDKRFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPELTVKSILTDLPPLWDRVKA
LQLKDAAQLALKKMPSSEQEALSMSEYQRGVSAWNFDIEDLKAQASLIHDDDPPEIKEDVDNDR
INEADKEPFSGNHFGQPKILSGKHFSEQTCVTAVSPGGNMHETSRGLVSEPGDADSERKVDGYR
KQGSENESLPSTSKHDSEGQNSSSEVKQKERTCSGPILCSGVHNKSITESSRIFDREAAVKLAS
DKQKSCTKRTTNLSGPLALPTRASANSLSAPIRSSGGYVGSLGDKSKRSVVEIKGRFSVTSENV
DLAKVQEVPTSGISRKLQEGSSLRKSASVGHWPVDAKPMSNSHQRKELCNGSVSASVLIPHLRN
LVQQTTFQQDLITNLLSSLQQNEKADATQYRLGNMDGDTEVETSISEGERSLLVKIFELQSRMI
SLTDELITTKLQHVQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017