Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d046579_circ_g.9 |
| ID in PlantcircBase | zma_circ_009988 |
| Alias | Zm09circ00049, GRMZM2G394722_C3 |
| Organism | Zea mays |
| Position | chr9: 96785388-96787549 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI2 |
| Parent gene | Zm00001d046579 |
| Parent gene annotation |
Transcription initiation factor TFIID subunit 1 |
| Parent gene strand | + |
| Alternative splicing | Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.6 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.8 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14 |
| Support reads | NA |
| Tissues | leaf, endosperm |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d046579_T024:3 Zm00001d046579_T003:3 Zm00001d046579_T002:2 Zm00001d046579_T006:3 Zm00001d046579_T027:1 Zm00001d046579_T026:2 Zm00001d046579_T008:2 Zm00001d046579_T001:3 Zm00001d046579_T007:3 Zm00001d046579_T029:1 Zm00001d046579_T019:3 Zm00001d046579_T025:3 Zm00001d046579_T005:3 Zm00001d046579_T004:3 Zm00001d046579_T016:3 Zm00001d046579_T023:3 Zm00001d046579_T009:3 Zm00001d046579_T011:3 Zm00001d046579_T020:3 Zm00001d046579_T018:3 Zm00001d046579_T015:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.177613098 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
96785436-96785424(+) 96785665-96787481(-) |
| Potential amino acid sequence |
MEKIGLLSHPEENMDFEYEDLENEKGTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQEPV RKVKTDHHKRPVDKELQIANVADNVEEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESISDV TLRLKDSCLSEQPMKDVHMDIRIVQRSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKICES EESEDTHGEDQGKDYGQASRCWDVQSKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTNEDN LDHIMPNNLDDAVKIDTMVRLNNLSVLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDHMLF EILDEKNVDHLQSHARAMIVSQSTKTSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQAKS HTKKRALMGIKVVHSAPAHKLQTMKPVLSNFYRAGRYDNLKR*(+) MHKTGREVALSGSSWPSPVPFSFSKSSYSKSMFSSGCDNKPIFSMARLSLEVVVSACSIEIAQH WLHGLQLMSWSRMHHLYAH*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Han et al., 2020;Zhang et al., 2019 |