Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d046579_circ_g.9 |
ID in PlantcircBase | zma_circ_009988 |
Alias | Zm09circ00049, GRMZM2G394722_C3 |
Organism | Zea mays |
Position | chr9: 96785388-96787549 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d046579 |
Parent gene annotation |
Transcription initiation factor TFIID subunit 1 |
Parent gene strand | + |
Alternative splicing | Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.6 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.8 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d046579_T024:3 Zm00001d046579_T003:3 Zm00001d046579_T002:2 Zm00001d046579_T006:3 Zm00001d046579_T027:1 Zm00001d046579_T026:2 Zm00001d046579_T008:2 Zm00001d046579_T001:3 Zm00001d046579_T007:3 Zm00001d046579_T029:1 Zm00001d046579_T019:3 Zm00001d046579_T025:3 Zm00001d046579_T005:3 Zm00001d046579_T004:3 Zm00001d046579_T016:3 Zm00001d046579_T023:3 Zm00001d046579_T009:3 Zm00001d046579_T011:3 Zm00001d046579_T020:3 Zm00001d046579_T018:3 Zm00001d046579_T015:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.177613098 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
96785436-96785424(+) 96785665-96787481(-) |
Potential amino acid sequence |
MEKIGLLSHPEENMDFEYEDLENEKGTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQEPV RKVKTDHHKRPVDKELQIANVADNVEEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESISDV TLRLKDSCLSEQPMKDVHMDIRIVQRSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKICES EESEDTHGEDQGKDYGQASRCWDVQSKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTNEDN LDHIMPNNLDDAVKIDTMVRLNNLSVLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDHMLF EILDEKNVDHLQSHARAMIVSQSTKTSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQAKS HTKKRALMGIKVVHSAPAHKLQTMKPVLSNFYRAGRYDNLKR*(+) MHKTGREVALSGSSWPSPVPFSFSKSSYSKSMFSSGCDNKPIFSMARLSLEVVVSACSIEIAQH WLHGLQLMSWSRMHHLYAH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |