Detail information of Zm00001d046579_circ_g.9


General Information
CircRNA Name Zm00001d046579_circ_g.9
ID in PlantcircBase zma_circ_009988
Alias Zm09circ00049, GRMZM2G394722_C3
Organism Zea mays
Position chr9: 96785388-96787549  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d046579
Parent gene annotation Transcription initiation factor TFIID subunit 1
Parent gene strand +
Alternative splicing Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.6 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.8 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d046579_T024:3
Zm00001d046579_T003:3
Zm00001d046579_T002:2
Zm00001d046579_T006:3
Zm00001d046579_T027:1
Zm00001d046579_T026:2
Zm00001d046579_T008:2
Zm00001d046579_T001:3
Zm00001d046579_T007:3
Zm00001d046579_T029:1
Zm00001d046579_T019:3
Zm00001d046579_T025:3
Zm00001d046579_T005:3
Zm00001d046579_T004:3
Zm00001d046579_T016:3
Zm00001d046579_T023:3
Zm00001d046579_T009:3
Zm00001d046579_T011:3
Zm00001d046579_T020:3
Zm00001d046579_T018:3
Zm00001d046579_T015:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCTAAATCTCATACTAAAAAACGCGCTTTAATGGGCATAAAGGTGGTGCATTCTGCTCCAGC
TCATAAGCTGCAAACCATGAAGCCAGTGTTGAGCAAtttctatcgagcaggcagatacgacaac
ctcaagcgataaccttgccatggaaaagattggcttgttatcacatccagaggaaaacatggac
tttgaata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1288
Transcript exons: 96785388-96785500,96785596-96785764,96786544-96787549
TTTCTATCGAGCAGGCAGATACGACAACCTCAAGCGATAACCTTGCCATGGAAAAGATTGGCTT
GTTATCACATCCAGAGGAAAACATGGACTTTGAATATGAAGATTTGGAGAATGAAAAGGGCACT
GGGGAAGGCCAGCTTGAGCCTGAAAGTGCAACTTCCCTTCCTGTTTTATGCATAGAGGATGGGA
ACGCTATCCTGAGATTCTCTGAAATTTTTGGTATCCAAGAGCCTGTAAGAAAAGTGAAGACAGA
TCACCACAAACGACCAGTGGATAAAGAGCTTCAGATCGCAAATGTTGCTGACAATGTTGAAGAA
GATGAGGAACTAATTCTCCGGAGCACTATGCAAAATTTCTCAACTTTGAAGCACATTCATGTGA
ATGAAGATTTTGTTGAGAGTGACAGTGATGAGTCTATTTCTGATGTCACTTTAAGGCTAAAGGA
TTCATGTCTTTCAGAACAACCAATGAAAGATGTGCATATGGATATTCGTATTGTCCAGCGATCT
CCAACTTGTCCTGATTTTTATCCACTTGAGCATTATGATTGGGAAAGTGATATCATTTGGAACA
ATTCACCAGCAACTGATCAGCAGGCTTATGCAAAAATCTGTGAATCTGAAGAGAGTGAGGACAC
TCATGGTGAAGACCAGGGTAAGGATTATGGCCAGGCCTCCAGGTGTTGGGATGTACAGAGTAAA
ACCAATGGTTCTCCAGTAATTAAAGAGACTTTTTGTTGTACAGAAATGCCTGCTCCAGCTAACT
ACTGCCCCCCTGGGAAAAGTTACCCTCCATTGACAAACGAAGATAACTTAGATCACATAATGCC
AAATAACTTAGATGATGCAGTTAAAATTGACACCATGGTGCGTTTAAATAACCTTAGTGTACTA
AACAGGGAATTATTAGAAGGATCATGGTTGGACAACATAATTTGGGATCCTAATGAGGTTACCC
CAAAGCCTAAACTGATCTTTGACCTCAAAGATGATCATATGCTTTTTGAGATCCTAGATGAAAA
GAATGTGGACCATCTCCAGTCTCATGCTCGTGCTATGATTGTTAGCCAGTCAACTAAGACTTCA
ACACCAACAGTTGACAATTTTGGCGATCAACCAAAGCCATTGAGTGGCAGGTTCAACATCTCCA
ATGACAAGTTTTATTCAAATAGGAAGACTCCACAACAAGCTAAATCTCATACTAAAAAACGCGC
TTTAATGGGCATAAAGGTGGTGCATTCTGCTCCAGCTCATAAGCTGCAAACCATGAAGCCAGTG
TTGAGCAA

Genomic sequence TTTCTATCGAGCAGGCAGATACGACAACCTCAAGCGATAACCTTGCCATGGAAAAGATTGGCTT
GTTATCACATCCAGAGGAAAACATGGACTTTGAATATGAAGATTTGGAGGTATATGAAGCCTGA
ACCTAGAAATTAACATTGCATTGTCCTGTATCATATTTGTATAATTAAAGCACTTCTCTTATTC
ATCTCTAATTAAGCAGAATGAAAAGGGCACTGGGGAAGGCCAGCTTGAGCCTGAAAGTGCAACT
TCCCTTCCTGTTTTATGCATAGAGGATGGGAACGCTATCCTGAGATTCTCTGAAATTTTTGGTA
TCCAAGAGCCTGTAAGAAAAGTGAAGACAGATCACCACAAACGACCAGTGGATAAAGGTATTGT
GCATGTTGCAACAAAAAGATCCAAGAAGCACCATCCTCCCCCATGTATGCAAGACATTGATAGA
TAGATGGTAGCTGGAGGGTGTTACCTGAAAGCAATGGTTACTGAGCATAATTATCCTTACTGCT
TATGTTTTCACTTTGAGATGAAAAAAATTAACTGCCACTGTCTATGTCAATGGTTTATACTTAT
CATTTCTAAAATCTGATTTTCCAATATGTTCATTATGTCTGAGGGCAAGTATCTGATTTTTTGG
AACAGTAGTTCTATAGAAATTGGCTCCTGATTGGGCCTAGTTATTATTATCGTGTTTTGAAACT
AGGCCAAAAACAAATGCGTGTCTTATTTGCCTTGTAGTTCCTATGACCGTAAAAAGATATAGCC
TATCAAAAGGGCCAACTATATGGAAAGGCAAGCAATTGTTGGCTTATTTCTTTCAGGTCTTCTA
ATTTATTGGCGTGAAGAAAAAAAATATTGATATGTGAACCTAATCTGCATCTGTATGACTTCTA
GTTTGATCAATTTATCCTTTTGCAGCATAACCATTGTTTACAATTGCTTTACTTTCTGCTGATT
TCCACAAAAGGAATGTATTATGTATCTGATCTTTTTTACTGCTATGTATGTACTTCTGTTTTTC
CTGACATCAAACTACCACAAGGCTTTGTTGCTCCTATGTGCCACAAGTCAATAGCTTGTTATCA
CAGTTATTCCAGATCAAAACATTTGAATACATTTAATATCATATTTGTCTTGTTGTAATTACTT
CCAGAGCTTCAGATCGCAAATGTTGCTGACAATGTTGAAGAAGATGAGGAACTAATTCTCCGGA
GCACTATGCAAAATTTCTCAACTTTGAAGCACATTCATGTGAATGAAGATTTTGTTGAGAGTGA
CAGTGATGAGTCTATTTCTGATGTCACTTTAAGGCTAAAGGATTCATGTCTTTCAGAACAACCA
ATGAAAGATGTGCATATGGATATTCGTATTGTCCAGCGATCTCCAACTTGTCCTGATTTTTATC
CACTTGAGCATTATGATTGGGAAAGTGATATCATTTGGAACAATTCACCAGCAACTGATCAGCA
GGCTTATGCAAAAATCTGTGAATCTGAAGAGAGTGAGGACACTCATGGTGAAGACCAGGGTAAG
GATTATGGCCAGGCCTCCAGGTGTTGGGATGTACAGAGTAAAACCAATGGTTCTCCAGTAATTA
AAGAGACTTTTTGTTGTACAGAAATGCCTGCTCCAGCTAACTACTGCCCCCCTGGGAAAAGTTA
CCCTCCATTGACAAACGAAGATAACTTAGATCACATAATGCCAAATAACTTAGATGATGCAGTT
AAAATTGACACCATGGTGCGTTTAAATAACCTTAGTGTACTAAACAGGGAATTATTAGAAGGAT
CATGGTTGGACAACATAATTTGGGATCCTAATGAGGTTACCCCAAAGCCTAAACTGATCTTTGA
CCTCAAAGATGATCATATGCTTTTTGAGATCCTAGATGAAAAGAATGTGGACCATCTCCAGTCT
CATGCTCGTGCTATGATTGTTAGCCAGTCAACTAAGACTTCAACACCAACAGTTGACAATTTTG
GCGATCAACCAAAGCCATTGAGTGGCAGGTTCAACATCTCCAATGACAAGTTTTATTCAAATAG
GAAGACTCCACAACAAGCTAAATCTCATACTAAAAAACGCGCTTTAATGGGCATAAAGGTGGTG
CATTCTGCTCCAGCTCATAAGCTGCAAACCATGAAGCCAGTGTTGAGCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.177613098
Functional Information
Coding potential Y
Potential coding position 96785436-96785424(+)
96785665-96787481(-)
Potential amino acid sequence MEKIGLLSHPEENMDFEYEDLENEKGTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQEPV
RKVKTDHHKRPVDKELQIANVADNVEEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESISDV
TLRLKDSCLSEQPMKDVHMDIRIVQRSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKICES
EESEDTHGEDQGKDYGQASRCWDVQSKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTNEDN
LDHIMPNNLDDAVKIDTMVRLNNLSVLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDHMLF
EILDEKNVDHLQSHARAMIVSQSTKTSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQAKS
HTKKRALMGIKVVHSAPAHKLQTMKPVLSNFYRAGRYDNLKR*(+)
MHKTGREVALSGSSWPSPVPFSFSKSSYSKSMFSSGCDNKPIFSMARLSLEVVVSACSIEIAQH
WLHGLQLMSWSRMHHLYAH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Han et al., 2020;Zhang et al., 2019