Detail information of Zm00001d046579_circ_g.12


General Information
CircRNA Name Zm00001d046579_circ_g.12
ID in PlantcircBase zma_circ_009991
Alias zma_circ_0003266, ZmciR411
Organism Zea mays
Position chr9: 96793895-96796581  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d046579
Parent gene annotation Transcription initiation factor TFIID subunit 1
Parent gene strand +
Alternative splicing Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.6 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.8 Zm00001d046579_circ_g.9 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d046579_T031:4
Zm00001d046579_T011:4
Zm00001d046579_T008:4
Zm00001d046579_T007:4
Zm00001d046579_T018:4
Zm00001d046579_T016:4
Zm00001d046579_T015:4
Zm00001d046579_T020:4
Zm00001d046579_T030:4
Zm00001d046579_T025:4
Zm00001d046579_T005:4
Zm00001d046579_T002:4
Zm00001d046579_T009:4
Zm00001d046579_T023:4
Zm00001d046579_T003:4
Zm00001d046579_T006:4
Zm00001d046579_T027:4
Zm00001d046579_T004:4
Zm00001d046579_T024:4
Zm00001d046579_T029:4
Zm00001d046579_T001:4
Zm00001d046579_T019:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTACAGAAAGGACCAAAGGGGCATTTTTTCTGGACACAGAGACCTGATTTCCGGGTTCCATCA
GAAGAAGAACTGAGGAGATTATTGACGCCAGAAAGTaattgaagccttctgagaagatcaaatt
gttctgttctgggaaagagcttcaggatgacatctcgttagcaatgcaaaatgtgcgaccaaac
tccattgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 875
Transcript exons: 96793895-96794132,96795073-96795409,96796179-96796385,96
796489-96796581
AATTGAAGCCTTCTGAGAAGATCAAATTGTTCTGTTCTGGGAAAGAGCTTCAGGATGACATCTC
GTTAGCAATGCAAAATGTGCGACCAAACTCCATTGTGCATGCTGTTCGCACTGAAGTGTACCTA
TGGCCAAAAGCACAGAAATTACCTGGTGAGGACAAGCCTCTACGCCCTCCTGGGGCTTTCAGGA
AAAAAACTGACTTGTCTATCAAGGATGGACATGTTTTTTTAATGGAATATTGTGAAGAGAGACC
TTTGCTTCTCTCGAATGCAGGAATGGGAGCCCGTCTCTGTACATATTACCAGAAAACTACCCCT
ACTGATCAGACAGCTGCATCACTGCGAAACAACAGTGATGGACTGGGCACAGTGCTTGCAATTG
ATCCTGCTGATAAATCCCCTTTTCTAGGAGAGATACATTCTGGGTCCCACCAATCTTGTCTTGA
AACAAACATGTATAGATCACCTGTATTTCCCCATAAGGTTGCACCAACTGATTACTTATTAGTT
CGTTCAGCCAAAGGGGCTCTTTCCCTCCGTCGCATTGACAAGCTATATGTTGTTGGCCAACAAG
AACCTCATATGGAAGTCTTTTCACCAGGGACTAAGAACATGCAAAATTATCTTCTGAACCGAGT
TCTTGCATATGTTTATCGTGAGTTTCGTGCTAGAGAGAGGCCTGATGCTATTCCTCAGATTCGA
GCTGACGAGTTACCCATACAAAGTCCTCTGACAGAAGCCATAGTGAAAAAACGATTGAAGCATT
GTGCAGATTTGAAGAAAGGACCAAAGGGGCATTTTTTCTGGACACAGAGACCTGATTTCCGGGT
TCCATCAGAAGAAGAACTGAGGAGATTATTGACGCCAGAAAGT

Genomic sequence AATTGAAGCCTTCTGAGAAGATCAAATTGTTCTGTTCTGGGAAAGAGCTTCAGGATGACATCTC
GTTAGCAATGCAAAATGTGCGACCAAACTCCATTGTGCATGCTGTTCGCACTGAAGTGTACCTA
TGGCCAAAAGCACAGAAATTACCTGGTGAGGACAAGCCTCTACGCCCTCCTGGGGCTTTCAGGA
AAAAAACTGACTTGTCTATCAAGGATGGACATGTTTTTTTAATGGAGTAAGTCCAATTTATTCC
CCCTTATTGTATATTGAAGTTATAATTTCAATGAACTTTAATGCATATGACTTTATATAGGCGC
TGATTTTTTGAATGTTAGTTGCTAGTTCAACGAAGTGGTATTACACAACTTTTGATGTGCCATG
GTCTGTTAGTTGAAATTTGGTCATAGATATCTCTTGAATTATTTATGACCTACAAAATTGTAAC
TATAAGAATTCACATTGAAATATGGATTTTTTCTACCAGTTTTGTATCTCATTGAACTCATATA
TAGTCAACCGACTTATTAGCTAGAAGTTACTTCATCACATAGCTGTACTGATAGTGTTGCAAAC
TTTGGTTGAGATTTATAATATTTTATTAATAGTTACTAAGTCACAATTCTATGTACCTTTGAAT
ACTACTCCAACGGATTTTCTATGATTTGATCACATACATCATAGATCCTTATATTAATTTATAG
ACTAAACTTGAACTTAGACAGTCAAATGATGGCTTATATTTTTGGGTGGAGGAATTACAATGTT
TGAACTTTTAGATGATGCACCTTACAGTAATGGAGGGAGTATATGGGAGGTAGCTTCTTGGGTA
GGTATTTCTGCTTGTGAATTGTGATTTGCTTGTTGGTATTGGGACTTTCTATCATGGTAGCACA
TGTGTTATTAACACATGACTGTAGATACTGTGAATAGAGAGCTCTGATACTTTACAACATCAAC
AACTACTACAAAGCCTTTTAGTCCCAAGCAAGTTGGGGTAGGCTAAGAGCTCTGATACTTTACA
GTGATTTTTTTATTCTTTTTACTTCTATTTTGGCCAAGTGCTTATCATTATGTTTATATGTGCA
AGGCTATGTTGGTTATGCACATTGTCAAATTTTGATTATGTTTTTTCGCCACTGTAGTAATTCA
TCTGTTGTTTATTGCCCTGAGTGCAGATATTGTGAAGAGAGACCTTTGCTTCTCTCGAATGCAG
GAATGGGAGCCCGTCTCTGTACATATTACCAGAAAACTACCCCTACTGATCAGACAGCTGCATC
ACTGCGAAACAACAGTGATGGACTGGGCACAGTGCTTGCAATTGATCCTGCTGATAAATCCCCT
TTTCTAGGAGAGATACATTCTGGGTCCCACCAATCTTGTCTTGAAACAAACATGTATAGATCAC
CTGTATTTCCCCATAAGGTTGCACCAACTGATTACTTATTAGTTCGTTCAGCCAAAGGGGCTCT
TTCCCTCCGTCGCATTGACAAGCTATATGTTGTTGGCCAACAAGTAAGCTCTGGTGCCTGAAAT
ACTATGTTCTGTATAAGCAGGATGTGCAATGTTTCCAACCCTTCCCTATCTGAAGTTTTTCATA
TTGTCAAGGATATGATCCCCTCACTGAATTCTCCGCTGTGGTGCATTCCCAAGCTTTGCACTGC
AGACCATGTTCTGAAATATTCATTGCTTAGGTTTAGCTTGTGATTGTTTCTGTGTGGGACCTTT
AGGCTTTACAGCTTTAGTGAACATAGCTGAAACATTGGATATTCCTTTGTTACAGTGGTAGAGA
TAGCTCTCGTCCATCATGTTTTGCATTTATGCTTGGCAGGGAAATTCAATTTCTTTTATTGATA
AAATCTGCTATGAAGTTCAGTAATGTAGTATTGTAGTGTGTTGCATGTTTAGAAGCTTCTTTGG
CGCAGTTTTAGCATGTCATGCATTTGTTGAATGATCCTACACGTTGGCAGTTTGTTGTCAGCAT
GTGAGAACAGAAGTACATGAGAATATCTGAACGTGAGCATTACAAATATGACTGGTATATGGTT
ATTGATTTCTGCGTAAAATTTGAAGAAACTATGTTCTGTATCCACTTTTTTTTCAAACAAATAT
AATACTCCTTGAGTTTTTTGTTTTTTTGTGTCAAGAATACTCCTCGAGTTCTTGCCATTTTCTG
CTGTTGTTAGAACAATACATTGGAAATAAATCATCAGTGTTTAGGAGCTGTTCTGTATTGGAGC
TTTAACGATTTCATCCCTAGGATAATAGTCATGGTTTCTTGCAGGAACCTCATATGGAAGTCTT
TTCACCAGGGACTAAGAACATGCAAAATTATCTTCTGAACCGAGTTCTTGCATATGTTTATCGT
GAGTTTCGTGCTAGAGAGAGGCCTGATGCTATTCCTCAGATTCGAGCTGACGAGTTACCCATAC
AAAGTCCTCTGACAGAAGCCATAGTGAAAAAACGATTGAAGCATTGTGCAGATTTGAAGGTATC
TGTCTATCACACATTTTATTCATAGTTTCTTTATCTGTATATTTTTATTCTGGACTCTTATTCA
ACCATATTTAATGATCTCCTGCACTTCCTTACAGAAAGGACCAAAGGGGCATTTTTTCTGGACA
CAGAGACCTGATTTCCGGGTTCCATCAGAAGAAGAACTGAGGAGATTATTGACGCCAGAAAGT
Conservation Information
Conserved circRNAs NA
PMCS 0.158903767
Functional Information
Coding potential Y
Potential coding position 96793967-96793897(+)
Potential amino acid sequence MQNVRPNSIVHAVRTEVYLWPKAQKLPGEDKPLRPPGAFRKKTDLSIKDGHVFLMEYCEERPLL
LSNAGMGARLCTYYQKTTPTDQTAASLRNNSDGLGTVLAIDPADKSPFLGEIHSGSHQSCLETN
MYRSPVFPHKVAPTDYLLVRSAKGALSLRRIDKLYVVGQQEPHMEVFSPGTKNMQNYLLNRVLA
YVYREFRARERPDAIPQIRADELPIQSPLTEAIVKKRLKHCADLKKGPKGHFFWTQRPDFRVPS
EEELRRLLTPESN*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019