Detail information of Zm00001d046579_circ_g.2


General Information
CircRNA Name Zm00001d046579_circ_g.2
ID in PlantcircBase zma_circ_002978
Alias circ1878
Organism Zea mays
Position chr9: 96781625-96785764  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d046579
Parent gene annotation Transcription initiation factor TFIID subunit 1
Parent gene strand +
Alternative splicing Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.6 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.8 Zm00001d046579_circ_g.9 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d046579_T006:6
Zm00001d046579_T025:5
Zm00001d046579_T015:6
Zm00001d046579_T027:1
Zm00001d046579_T004:6
Zm00001d046579_T001:6
Zm00001d046579_T007:6
Zm00001d046579_T011:6
Zm00001d046579_T024:6
Zm00001d046579_T009:6
Zm00001d046579_T019:6
Zm00001d046579_T020:6
Zm00001d046579_T002:6
Zm00001d046579_T018:6
Zm00001d046579_T005:6
Zm00001d046579_T003:6
Zm00001d046579_T026:3
Zm00001d046579_T008:6
Zm00001d046579_T023:6
Zm00001d046579_T016:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGATGGGAACGCTATCCTGAGATTCTCTGAAATTTTTGGTATCCAAGAGCCTGTAAGAAAAG
TGAAGACAGATCACCACAAACGACCAGTGGATAAAGgatgacgatgacgacgaggattatgagg
agcctggtggaggaaatcacttattggggtttatgttcggcaatgtagatgattctggtgattt
agatgctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGACGATGACGACGAGGATTATGAGGAGCCTGGTGGAGGAAATCACTTATTGGGGTTTATGT
TCGGCAATGTAGATGATTCTGGTGATTTAGATGCTGACTATCTTGATGAGGTAGACACTTCTTT
ATCTGTTTTTGTTGACATGCAAATGTCCTGTTTTTTGTTGTTTTTATTATTTTATTTCATGTGT
CTGTCTCTAGGAGATGACATTCATTTTATTCGTTTCACCTTTTCAATTGTGTGGATGTCTGATA
TCTGTATCTGTTTTTGATCTTAGTGCATTCTCAATTGGTCATGATTTTATACAGATTTAACTTC
TTTGTTGGTTCTCTTTTTCTTAACATTTTGATCCTTAGACTTGTGTTTTAGGGTGCTCGGTTGC
TTTATAGGAACCATCATCACTATAAGAACCATATTCCTCTGATTAAATTAATTTAATTTGAGTT
CTGGAAATGATGAGATAGGGAAATTCAATGCGACGAAACCAAATTTCTCAGTCCATGCATTGTA
ATTTTCTCGTAATTTGGATGTTTTTTGAATAATAGTTAGTAGAACTCACTAAATTTTAGCCAGA
ATAAAGGTTAGTTGCTAAACCTTAGGGTACTTTGGTTTTATTGTTTTTCCATTGTCTGCAGGAA
ACAAAGTCATTGTTTATTGTTTAGTTATGTTTATAATGCAATTTGGATGTTGCATTTATTTATA
CTTTTATTTTGCTTAACTCAGGATGCAAAGGAACACCTTTTTGCACTGGCAGATAAGCTTGGTC
CATCTCTCAAAGACATTGACGTAAGTTATCTTATGCGTATAGTTAATCTTACTTATCTATTTCA
TTACCAAACAAGTTAATACTATGTTGTTTGCTAATTAGCTAATGAAGTCTTCTCCAGCACCAAC
TGATCCTTCCGAACAAGGTTAGTGACATATTACTGTTTCCATATAAGCTGCACCTACAGTTTTG
AGAGTTATTCATCAAGCCAACTTTGCCATTGCTTAGGAAGACCTTATTCTTCTTTTTCGTGTCA
AACTATGCACATAATTGATAACACATCTTTTTGTTGTTATGTAGACTATGATGAGAAGGCAGAA
GATGCTGTTGATTATGAAGATATTGATGAAGAATATGATGGACCTGAAGTTGAGGCAACTACAG
AGGAAGACAATGTGTTGTCAAAAAAGGATTACTTCTCTTCATCTACAGTGTATGCATCAGTCAA
CAGTACAGTTTCAGTGTTTGACGATGAAAACTACGATGAGGAAGAAGAACCACCCAATGATAAT
GAGCCTCCTGGTGATAGTGCTGCCCAAAATTTATCTTCAGGTGATACTGGATAATGTGCCTAAT
GTTTTCAAGTTCCATTTATGTTAGCATTCATCCTATTTTTCTTACTACTTTATCGTTTCCATGC
TGCCCCTTTTATTTGTTCCTTCTATCTAGTGATTAAACATTTGTAGCTTGGCACCTCCGTTTTG
GTCTGCAACTGTATTTGTCTTTATATTTGCATGTCCAACCTCCCTTCTGCTGGCTTGGGCAAGC
GTTGATGGTAGCGATGAAGTCTGTTCCAGTCTAACTCTAATAAAATGAACTGAAGACTTGACCA
TCTTTTTTTCACCTTTTTCTATTGTGATCATAGACTCTAGTTTGGCGTAAACTTCTGTTATGAT
CGCTAGATCAGTGAGGGATTGGAGAGGGTATCGATGGGTAGGAACGTCGGCCGGGGGCCTCTGC
CCACGGCCTAGCAAGAGGAGGGTTTCTCCCTTCTAATTCTTGCTTAATTTATTTCTCATCCATT
GATTACATAAATAGGCCAGCTGGCCGCCCCTATCTAGCTAGAGATCCTTATCTCCTTAAAACTC
TCCTAAAAACTCTCAACAAACTACTAACTGATAACCTTCCTAGATAATCTCAACTAATCTTCTA
ATCTTATCTCTAACTATCCTTATCTAATCCCCCTTGGAGGGCCCATGGTTGCTGCTGCTGCAGC
CCCTCCGTGGGCCTCCTTAGGCCCTGAAACTACACCCCTCCTGGATAAGCAACTCGTCCTCGAG
CTGTAGCATGACGGGTGCTCAAAGATCGAGTCTACTTGACCCAAAACTAGACACCTAGAAGACA
AACCTTTTACATCTCGACTTATCTTATTATTCCGAATCTGAATTTTTTTGACCCCATAAGATAA
GGCGGACACCCTCCGCGCATTGGACTTGCACGTGTGTAGCCTCCTGGATCACATGGACGCCATC
TGGACGAAAGGGAAGCACATGGACGGGCTCCTGGAGTAGGTCGCAACAATAACCAGCGGAGGCG
CCCTCGTGGCGGCCGGTAGCGGAATGTGGTGGCGCTAAATAGTGCGCCCTTGTCGATGACGAGG
GGAGTGCCTTCCCTACCGCCGCTGTCGTAGAGTTGAAGTTCGTCGCCCGTGGGACACGTACCAT
GCTCACACTTGGAGATAGCGGCCCGGTGCCGCTGCTGATGGCCGTCCGACAGGGCGAGGTCGCA
CCCCTGTGTGCCGAGGTCAACCGTCACCAAGGCTGCCTCGAGCATCTGCCGGCGCATCTCCCGC
ACTCTCCGTCGTGTAAGGAAGCCACAAGCAGCAGCCTGTATGCCCACAGCCGCTGACGTCTGGA
GCCATGCGGACAACACCAGCTGGTGCTGCTCATGTTGCACTACTGCGGTGATTTGCAACAGCCC
TTGCTCAACCTTCTGGAGCGTGGCTTGCATCTTTGCGAGATCAGCCCTAATGTTGGTCCACAAG
TCCCCCATCGATGGAGCTAGTGATTGCTGAGCCGTGGCTGCCCCTAGTGGCGTCGCCCATGGGG
ACGGAGACGCCGTCAATGAAAATGATGTGACGAAATTTGGCGTTGTCCTTGGGGATGGGCATGC
CGGCGTCCATGATGTGGTGTCAAAATTAGCAGGCTATGCTGCCCATTGAGATAGGGACGCCAGT
TGCCAGGATGGCGTGACGAAGGTGGCATGCGGCGCAACCCATGGAGATGGTGACATCGGTTGCC
AGGACGGCGTGACGAAGGTGACATGCGGCGCCATTTCATGGAGATGGGGACGCCGGTTGCCAGG
ATGACACCGCGAAATTGGCAGCAGAAGCCATGGGATCAGATCGAAACCCAAGCTATCCGATACC
AGATGTTATGATCGCTAGATCGGTGAGGGATTGGAGAAGAGTATCGATGGGTAGGAACGTCGGC
CGGGGGCCTCCGCCCATGGCCGAGCAAGAGGAGGGTTTCTCCCTTCTAATTCTTGCTTACTTTA
TTTCTCATCCATTGATTACATAAATAGGCCAGCTGGCCGCCCCTATCTAGCTAGAGATCCTTAT
CTCCTTAAAACTCTCAACAAACTACTAACTGATAACCTTCCTAGATAATCTCAACTAATCTCCT
AAATAATCTCAACTAATATTCTAATCTTATCTCTAACTATCCTTATCTAATCCCCTTGGAGGCC
CCATGGTTGCTGCTGCCGCCGCAGCCCCTCCGTGGGCCTCCTTAGGCCCTGACAACTTCACTTT
AAATTATTGAAGATGAAAACTTGTCAGAATGTTATGCAACCTTTTTGTTCAAGCAAACTTGATT
TTAATTGCCGAGCACATGTTATAAAATAAAAGAACATTTTTTTGTTTTTTTCTTGAAACAACTA
GAGCATTCATCTGTCAGCTCTAACACATCGAATTTCAATCTTTTTATCTATTAATATTTGTTAT
AGCTAAGCTAACTGACTTGATTCTCATTTCTCTTAATCTTTTTGGATATAGTTTCTATCGAGCA
GGCAGATACGACAACCTCAAGCGATAACCTTGCCATGGAAAAGATTGGCTTGTTATCACATCCA
GAGGAAAACATGGACTTTGAATATGAAGATTTGGAGGTATATGAAGCCTGAACCTAGAAATTAA
CATTGCATTGTCCTGTATCATATTTGTATAATTAAAGCACTTCTCTTATTCATCTCTAATTAAG
CAGAATGAAAAGGGCACTGGGGAAGGCCAGCTTGAGCCTGAAAGTGCAACTTCCCTTCCTGTTT
TATGCATAGAGGATGGGAACGCTATCCTGAGATTCTCTGAAATTTTTGGTATCCAAGAGCCTGT
AAGAAAAGTGAAGACAGATCACCACAAACGACCAGTGGATAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.05252807
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b