Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d046579_circ_g.8 |
ID in PlantcircBase | zma_circ_009987 |
Alias | Zm09circ00046 |
Organism | Zea mays |
Position | chr9: 96781626-96800706 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d046579 |
Parent gene annotation |
Transcription initiation factor TFIID subunit 1 |
Parent gene strand | + |
Alternative splicing | Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.6 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.9 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d046579_T029:8 Zm00001d046579_T031:6 Zm00001d046579_T018:14 Zm00001d046579_T004:13 Zm00001d046579_T024:14 Zm00001d046579_T008:13 Zm00001d046579_T025:13 Zm00001d046579_T002:13 Zm00001d046579_T009:13 Zm00001d046579_T005:14 Zm00001d046579_T019:14 Zm00001d046579_T030:6 Zm00001d046579_T016:14 Zm00001d046579_T006:14 Zm00001d046579_T007:14 Zm00001d046579_T015:14 Zm00001d046579_T011:14 Zm00001d046579_T026:3 Zm00001d046579_T001:14 Zm00001d046579_T023:14 Zm00001d046579_T003:14 Zm00001d046579_T020:14 Zm00001d046579_T027:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.163640519 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
96793967-96781697(+) |
Potential amino acid sequence |
MQNVRPNSIVHAVRTEVYLWPKAQKLPGEDKPLRPPGAFRKKTDLSIKDGHVFLMEYCEERPLL LSNAGMGARLCTYYQKTTPTDQTAASLRNNSDGLGTVLAIDPADKSPFLGEIHSGSHQSCLETN MYRSPVFPHKVAPTDYLLVRSAKGALSLRRIDKLYVVGQQEPHMEVFSPGTKNMQNYLLNRVLA YVYREFRARERPDAIPQIRADELPIQSPLTEAIVKKRLKHCADLKKGPKGHFFWTQRPDFRVPS EEELRRLLTPESVCCYESMQAGLYRLKRLGILKLTQPVGLASAMNQLPDEAIELAAASHIEREL QITSWNLTSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRVAPKAPASNSVLKKKSAAAK GTTVTGTDADLRRLSMDAAREMTMTTRIMRSLVEEITYWGLCSAM*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |