Detail information of Zm00001d046579_circ_g.8


General Information
CircRNA Name Zm00001d046579_circ_g.8
ID in PlantcircBase zma_circ_009987
Alias Zm09circ00046
Organism Zea mays
Position chr9: 96781626-96800706  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI2
Parent gene Zm00001d046579
Parent gene annotation Transcription initiation factor TFIID subunit 1
Parent gene strand +
Alternative splicing Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.6 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.9 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d046579_T029:8
Zm00001d046579_T031:6
Zm00001d046579_T018:14
Zm00001d046579_T004:13
Zm00001d046579_T024:14
Zm00001d046579_T008:13
Zm00001d046579_T025:13
Zm00001d046579_T002:13
Zm00001d046579_T009:13
Zm00001d046579_T005:14
Zm00001d046579_T019:14
Zm00001d046579_T030:6
Zm00001d046579_T016:14
Zm00001d046579_T006:14
Zm00001d046579_T007:14
Zm00001d046579_T015:14
Zm00001d046579_T011:14
Zm00001d046579_T026:3
Zm00001d046579_T001:14
Zm00001d046579_T023:14
Zm00001d046579_T003:14
Zm00001d046579_T020:14
Zm00001d046579_T027:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATTCAGTGCTCAAGAAGAAGTCAGCTGCTGCAAAGGGTACCACTGTAACTGGCACTGATGCT
GATCTCCGCAGATTGAGCATGGATGCAGCCCGTGAGatgacgatgacgacgaggattatgagga
gcctggtggaggaaatcacttattggggtttatgttcggcaatgtagatgattctggtgattta
gatgctga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 3258
Transcript exons: 96781626-96781738,96782350-96782412,96782495-96782537,96
782693-96782944,96785388-96785500,96785596-96785764,9678
6544-96787549,96790240-96790442,96793885-96794132,967950
73-96795409,96796179-96796385,96796489-96796581,96797421
-96797627,96800503-96800706
ATGACGATGACGACGAGGATTATGAGGAGCCTGGTGGAGGAAATCACTTATTGGGGTTTATGTT
CGGCAATGTAGATGATTCTGGTGATTTAGATGCTGACTATCTTGATGAGGATGCAAAGGAACAC
CTTTTTGCACTGGCAGATAAGCTTGGTCCATCTCTCAAAGACATTGACCTAATGAAGTCTTCTC
CAGCACCAACTGATCCTTCCGAACAAGACTATGATGAGAAGGCAGAAGATGCTGTTGATTATGA
AGATATTGATGAAGAATATGATGGACCTGAAGTTGAGGCAACTACAGAGGAAGACAATGTGTTG
TCAAAAAAGGATTACTTCTCTTCATCTACAGTGTATGCATCAGTCAACAGTACAGTTTCAGTGT
TTGACGATGAAAACTACGATGAGGAAGAAGAACCACCCAATGATAATGAGCCTCCTGGTGATAG
TGCTGCCCAAAATTTATCTTCAGTTTCTATCGAGCAGGCAGATACGACAACCTCAAGCGATAAC
CTTGCCATGGAAAAGATTGGCTTGTTATCACATCCAGAGGAAAACATGGACTTTGAATATGAAG
ATTTGGAGAATGAAAAGGGCACTGGGGAAGGCCAGCTTGAGCCTGAAAGTGCAACTTCCCTTCC
TGTTTTATGCATAGAGGATGGGAACGCTATCCTGAGATTCTCTGAAATTTTTGGTATCCAAGAG
CCTGTAAGAAAAGTGAAGACAGATCACCACAAACGACCAGTGGATAAAGAGCTTCAGATCGCAA
ATGTTGCTGACAATGTTGAAGAAGATGAGGAACTAATTCTCCGGAGCACTATGCAAAATTTCTC
AACTTTGAAGCACATTCATGTGAATGAAGATTTTGTTGAGAGTGACAGTGATGAGTCTATTTCT
GATGTCACTTTAAGGCTAAAGGATTCATGTCTTTCAGAACAACCAATGAAAGATGTGCATATGG
ATATTCGTATTGTCCAGCGATCTCCAACTTGTCCTGATTTTTATCCACTTGAGCATTATGATTG
GGAAAGTGATATCATTTGGAACAATTCACCAGCAACTGATCAGCAGGCTTATGCAAAAATCTGT
GAATCTGAAGAGAGTGAGGACACTCATGGTGAAGACCAGGGTAAGGATTATGGCCAGGCCTCCA
GGTGTTGGGATGTACAGAGTAAAACCAATGGTTCTCCAGTAATTAAAGAGACTTTTTGTTGTAC
AGAAATGCCTGCTCCAGCTAACTACTGCCCCCCTGGGAAAAGTTACCCTCCATTGACAAACGAA
GATAACTTAGATCACATAATGCCAAATAACTTAGATGATGCAGTTAAAATTGACACCATGGTGC
GTTTAAATAACCTTAGTGTACTAAACAGGGAATTATTAGAAGGATCATGGTTGGACAACATAAT
TTGGGATCCTAATGAGGTTACCCCAAAGCCTAAACTGATCTTTGACCTCAAAGATGATCATATG
CTTTTTGAGATCCTAGATGAAAAGAATGTGGACCATCTCCAGTCTCATGCTCGTGCTATGATTG
TTAGCCAGTCAACTAAGACTTCAACACCAACAGTTGACAATTTTGGCGATCAACCAAAGCCATT
GAGTGGCAGGTTCAACATCTCCAATGACAAGTTTTATTCAAATAGGAAGACTCCACAACAAGCT
AAATCTCATACTAAAAAACGCGCTTTAATGGGCATAAAGGTGGTGCATTCTGCTCCAGCTCATA
AGCTGCAAACCATGAAGCCAGTGTTGAGCAATAAGGAAATTGCAAACTTTCATAGACCAAGAGC
TAAGTGGTACCCACATGAAAATAAAATTGCCTCTCAGTTACAAGGACCTGCTTGTAGCCATGGG
AGGATGGCTGTTTTACTTATGTCATTGGGAGGAAAAGGAGTCAAGATTCTGGTCAATGCTGAGG
ACACTCCGGTCTCTGTCAAATTAAAAGCATCAAAGAAGTTCGCTTTTTGCAGAATTGAAGCCTT
CTGAGAAGATCAAATTGTTCTGTTCTGGGAAAGAGCTTCAGGATGACATCTCGTTAGCAATGCA
AAATGTGCGACCAAACTCCATTGTGCATGCTGTTCGCACTGAAGTGTACCTATGGCCAAAAGCA
CAGAAATTACCTGGTGAGGACAAGCCTCTACGCCCTCCTGGGGCTTTCAGGAAAAAAACTGACT
TGTCTATCAAGGATGGACATGTTTTTTTAATGGAATATTGTGAAGAGAGACCTTTGCTTCTCTC
GAATGCAGGAATGGGAGCCCGTCTCTGTACATATTACCAGAAAACTACCCCTACTGATCAGACA
GCTGCATCACTGCGAAACAACAGTGATGGACTGGGCACAGTGCTTGCAATTGATCCTGCTGATA
AATCCCCTTTTCTAGGAGAGATACATTCTGGGTCCCACCAATCTTGTCTTGAAACAAACATGTA
TAGATCACCTGTATTTCCCCATAAGGTTGCACCAACTGATTACTTATTAGTTCGTTCAGCCAAA
GGGGCTCTTTCCCTCCGTCGCATTGACAAGCTATATGTTGTTGGCCAACAAGAACCTCATATGG
AAGTCTTTTCACCAGGGACTAAGAACATGCAAAATTATCTTCTGAACCGAGTTCTTGCATATGT
TTATCGTGAGTTTCGTGCTAGAGAGAGGCCTGATGCTATTCCTCAGATTCGAGCTGACGAGTTA
CCCATACAAAGTCCTCTGACAGAAGCCATAGTGAAAAAACGATTGAAGCATTGTGCAGATTTGA
AGAAAGGACCAAAGGGGCATTTTTTCTGGACACAGAGACCTGATTTCCGGGTTCCATCAGAAGA
AGAACTGAGGAGATTATTGACGCCAGAAAGTGTTTGCTGTTATGAAAGTATGCAAGCTGGTTTG
TATCGTCTCAAGCGCTTAGGAATTCTGAAGCTTACTCAGCCTGTTGGATTGGCTTCTGCCATGA
ATCAGCTTCCTGATGAGGCTATTGAGCTTGCTGCTGCATCACATATCGAGAGGGAACTGCAAAT
CACTAGCTGGAATCTTACAAGTAATTTCGTCGCTTGTACTAATCAGGACAGAGAAAATATAGAA
AGATTAGAAATCACTGGTGTTGGAGATCCATCTGGTCGTGGGTTAGGATTCAGCTATGTGCGAG
TAGCACCAAAAGCACCTGCCTCCAATTCAGTGCTCAAGAAGAAGTCAGCTGCTGCAAAGGGTAC
CACTGTAACTGGCACTGATGCTGATCTCCGCAGATTGAGCATGGATGCAGCCCGTGAG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.163640519
Functional Information
Coding potential Y
Potential coding position 96793967-96781697(+)
Potential amino acid sequence MQNVRPNSIVHAVRTEVYLWPKAQKLPGEDKPLRPPGAFRKKTDLSIKDGHVFLMEYCEERPLL
LSNAGMGARLCTYYQKTTPTDQTAASLRNNSDGLGTVLAIDPADKSPFLGEIHSGSHQSCLETN
MYRSPVFPHKVAPTDYLLVRSAKGALSLRRIDKLYVVGQQEPHMEVFSPGTKNMQNYLLNRVLA
YVYREFRARERPDAIPQIRADELPIQSPLTEAIVKKRLKHCADLKKGPKGHFFWTQRPDFRVPS
EEELRRLLTPESVCCYESMQAGLYRLKRLGILKLTQPVGLASAMNQLPDEAIELAAASHIEREL
QITSWNLTSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRVAPKAPASNSVLKKKSAAAK
GTTVTGTDADLRRLSMDAAREMTMTTRIMRSLVEEITYWGLCSAM*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020