Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d046579_circ_g.8 |
| ID in PlantcircBase | zma_circ_009987 |
| Alias | Zm09circ00046 |
| Organism | Zea mays |
| Position | chr9: 96781626-96800706 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ue-circRNA |
| Identification method | CIRI2 |
| Parent gene | Zm00001d046579 |
| Parent gene annotation |
Transcription initiation factor TFIID subunit 1 |
| Parent gene strand | + |
| Alternative splicing | Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.6 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.9 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14 |
| Support reads | NA |
| Tissues | leaf, endosperm |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d046579_T029:8 Zm00001d046579_T031:6 Zm00001d046579_T018:14 Zm00001d046579_T004:13 Zm00001d046579_T024:14 Zm00001d046579_T008:13 Zm00001d046579_T025:13 Zm00001d046579_T002:13 Zm00001d046579_T009:13 Zm00001d046579_T005:14 Zm00001d046579_T019:14 Zm00001d046579_T030:6 Zm00001d046579_T016:14 Zm00001d046579_T006:14 Zm00001d046579_T007:14 Zm00001d046579_T015:14 Zm00001d046579_T011:14 Zm00001d046579_T026:3 Zm00001d046579_T001:14 Zm00001d046579_T023:14 Zm00001d046579_T003:14 Zm00001d046579_T020:14 Zm00001d046579_T027:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.163640519 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
96793967-96781697(+) |
| Potential amino acid sequence |
MQNVRPNSIVHAVRTEVYLWPKAQKLPGEDKPLRPPGAFRKKTDLSIKDGHVFLMEYCEERPLL LSNAGMGARLCTYYQKTTPTDQTAASLRNNSDGLGTVLAIDPADKSPFLGEIHSGSHQSCLETN MYRSPVFPHKVAPTDYLLVRSAKGALSLRRIDKLYVVGQQEPHMEVFSPGTKNMQNYLLNRVLA YVYREFRARERPDAIPQIRADELPIQSPLTEAIVKKRLKHCADLKKGPKGHFFWTQRPDFRVPS EEELRRLLTPESVCCYESMQAGLYRLKRLGILKLTQPVGLASAMNQLPDEAIELAAASHIEREL QITSWNLTSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRVAPKAPASNSVLKKKSAAAK GTTVTGTDADLRRLSMDAAREMTMTTRIMRSLVEEITYWGLCSAM*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Han et al., 2020 |